View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5868_low_12 (Length: 238)
Name: NF5868_low_12
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 12011525 - 12011318
Alignment:
| Q |
13 |
ttattcttgggaccgcgttggtttatatgtatgcgaagaatggggatattttgacggcgaggaagttgtttgatgaaatgcctgagcggaatgttgttac |
112 |
Q |
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| T |
12011525 |
ttattcttgggaccgcgttggtttatatgtatgcgaagaatggggatattttgacggcgaggaagttgtttgatgaaatgcctgagcggaatgttgttac |
12011426 |
T |
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| Q |
113 |
ttggaatgctatgatttgtggtttggcttctcatggacatgttgaagatgctcttggtttgtttgagtgtatgaaggaggaggagattgttgttcctaat |
212 |
Q |
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| T |
12011425 |
ttggaatgctatgatttgtggtttggcttctcatggacatgttgaagatgctcttggtttgtttgagtgtatgaaggaggaggagattgttgttcctaat |
12011326 |
T |
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| Q |
213 |
gctgtcac |
220 |
Q |
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| T |
12011325 |
gctgtcac |
12011318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 38183472 - 38183349
Alignment:
| Q |
100 |
ggaatgttgttacttggaatgctatgatttgtggtttggcttctcat---ggacatgttgaagatgctcttggtttgtttgagtgtatgaaggaggagga |
196 |
Q |
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| T |
38183472 |
ggaatgttgctacttggaatgctatgatatttggtttggcttctcatcatggacatgttgaagatgctcttaatttatttgagagtatgaagaaggaggg |
38183373 |
T |
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| Q |
197 |
gattgttgttcctaatgctgtcac |
220 |
Q |
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| T |
38183372 |
gattgttgttcctaatggtgtcac |
38183349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 21009788 - 21009697
Alignment:
| Q |
85 |
atgaaatgcctgagcggaatgttgttacttggaatgctatgatttgtggtttggcttctcatggacatgttgaagatgctcttggtttgttt |
176 |
Q |
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| T |
21009788 |
atgaaatgtctgaaaggaatgttgttatttggaatgctatgatatgtgctttggcttctcatgtgcatgttgaagatgctcttagtctgttt |
21009697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 20952982 - 20952904
Alignment:
| Q |
88 |
aaatgcctgagcggaatgttgttacttggaatgctatgatttgtggtttggcttctcatggacatgttgaagatgctct |
166 |
Q |
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| T |
20952982 |
aaatgcctgagaggagtgttgttacttggaatgccatgatatgtggttcggcgtctcatgcaaatgttgaagatgctct |
20952904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 4605956 - 4605915
Alignment:
| Q |
69 |
gcgaggaagttgtttgatgaaatgcctgagcggaatgttgtt |
110 |
Q |
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| T |
4605956 |
gcgaggaaggtgtttgatgaaatgcctgagaggaatgttgtt |
4605915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 8998601 - 8998557
Alignment:
| Q |
75 |
aagttgtttgatgaaatgcctgagcggaatgttgttacttggaat |
119 |
Q |
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| T |
8998601 |
aagttgtttgatgtaatgcctgagaggaatttggttacttggaat |
8998557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 21516117 - 21516167
Alignment:
| Q |
79 |
tgtttgatgaaatgcctgagcggaatgttgttacttggaatgctatgattt |
129 |
Q |
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| T |
21516117 |
tgtttgatgaaatgcctgaacggaatgttgtgtcgtggactgctatgattt |
21516167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 36285872 - 36285920
Alignment:
| Q |
79 |
tgtttgatgaaatgcctgagcggaatgttgttacttggaatgctatgat |
127 |
Q |
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| T |
36285872 |
tgtttgatgaaatgcctgaaagggatgttgttccttgtaatgctatgat |
36285920 |
T |
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