View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5868_low_3 (Length: 622)

Name: NF5868_low_3
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5868_low_3
NF5868_low_3
[»] chr3 (1 HSPs)
chr3 (107-620)||(33129890-33130405)
[»] chr2 (2 HSPs)
chr2 (124-312)||(15480738-15480928)
chr2 (357-537)||(15480454-15480634)
[»] chr7 (8 HSPs)
chr7 (112-238)||(5569000-5569124)
chr7 (124-238)||(3614665-3614780)
chr7 (124-302)||(35611702-35611882)
chr7 (407-542)||(35611443-35611578)
chr7 (407-491)||(5568722-5568806)
chr7 (407-542)||(3614967-3615102)
chr7 (259-302)||(3614806-3614848)
chr7 (258-302)||(5568931-5568976)
[»] chr4 (4 HSPs)
chr4 (124-302)||(9981706-9981888)
chr4 (407-508)||(9981485-9981586)
chr4 (357-446)||(51541029-51541117)
chr4 (254-302)||(20855344-20855392)
[»] scaffold1903 (2 HSPs)
scaffold1903 (410-508)||(589-687)
scaffold1903 (124-238)||(844-959)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 107 - 620
Target Start/End: Original strand, 33129890 - 33130405
Alignment:
Q  107 atgcattctctttctaattctaatatgctacaaacatcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33129890 atgcattctctttctaattctaatatgctacaaacatcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgtt 33129989  T
Q  207 gctgtttttaaacatacccgtaacttcaatttnnnnnnnnnt-tccacttttttgaatcgggtatttgttattgttgtttctgaaactacccattatctg 305  Q
    |||||||||||||||| || ||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33129990 gctgtttttaaacatatccataacttcaatttaaaaaaaaaaatccacttttttgaatcgggtatttgttattgttgtttctgaaactacccattatctg 33130089  T
Q  306 aattttgnnnnnnnn-tcgannnnnnngaatcgggtatttttgttttgattgatccatggatgcacaagcgggtttctcactggggttaaacgccaccat 404  Q
    |||||||         ||||       ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  33130090 aattttgaaaaaaaaatcgatttttttgaatcgggtatttttgttttggttgatccatggatgcacaagcgggtttatcactggggttaaacgctaccat 33130189  T
Q  405 gacatctccaacaaattcatcacatgggtcactcactgataaatctttttaattcaatttaaattcaaaaccaaacccttctctttcgtggagtttcctt 504  Q
    | |||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||| ||| |||| |||    
T  33130190 gccatctccaacaaattcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcctggcgtttactt 33130289  T
Q  505 catgtacaaccatactaccatgttcatcttaatctcatcaatcagtaacaggcacaagattaagttgttgctgatcttggggaagtcgaaggtgcaacaa 604  Q
    |||| | ||||| || || |||||||||||||||||||||| ||  |||||| ||||||| ||||||||| || | |||| ||||  ||||||| |||||    
T  33130290 catgaaaaaccagacaacaatgttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaa 33130389  T
Q  605 ttgttttcatgggtag 620  Q
    ||| ||| ||||||||    
T  33130390 ttgattttatgggtag 33130405  T

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Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 124 - 312
Target Start/End: Complemental strand, 15480928 - 15480738
Alignment:
Q  124 ttctaatatgctacaaacatc---ctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca 220  Q
    ||||||||||| |||||||||   ||||||||||||||||||| |||||||||||||||||||||  |  ||||||||||||||||  ||| ||| ||||    
T  15480928 ttctaatatgcaacaaacatcttcctcttcatccttaccttatcattctcactccacccattgttcatgtccttgttcttgttgttattgtctttgaaca 15480829  T
Q  221 tacccgtaacttcaatttnnnnnnnnnttccacttttttgaatcgggtatttgttattgttgtttctgaaactacccattatctgaattttg 312  Q
    ||||| ||||||||||||         || || |||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  15480828 tacccataacttcaattt-taaaaaaattacattttttttaattgggtatttgttattgttgttactgaaactacccattacctgaattttg 15480738  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 357 - 537
Target Start/End: Complemental strand, 15480634 - 15480454
Alignment:
Q  357 atccatggatgcacaagcgggtttctcactggggttaaacgccaccatgacatctccaacaaattcatcacatgggtcactcactgataaatctttttaa 456  Q
    |||||||||||||||||||| ||| || | |||||||||| | |  ||| | |||| ||||||||||||| |||||| |||| ||||||| ||||||| |    
T  15480634 atccatggatgcacaagcggctttatctcgggggttaaacactattatgtcgtctcaaacaaattcatcaaatgggtgactcgctgataactctttttca 15480535  T
Q  457 ttcaatttaaattcaaaaccaaacccttctctttcgtggagtttccttcatgtacaaccatactaccatgttcatcttaat 537  Q
    ||| |||| ||||||||||||||||||||| |||  ||| |||| ||||||| | ||||| || || |||||||| |||||    
T  15480534 ttccatttgaattcaaaaccaaacccttctatttaatggtgtttacttcatgaaaaaccagacaacaatgttcatgttaat 15480454  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 5569124 - 5569000
Alignment:
Q  112 ttctctttctaattctaatatgctacaaacatcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgt 211  Q
    ||||||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  ||    || |||||||| ||| |||    
T  5569124 ttctctttctctttctaatatgctacaaaaatcttcttcatccttaccttattattctcactccacccattgt--ttatagtttttcttgttattgttgt 5569027  T
Q  212 ttttaaacatacccgtaacttcaattt 238  Q
    |||| ||||||||| ||||||||||||    
T  5569026 ttttgaacatacccataacttcaattt 5569000  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 3614665 - 3614780
Alignment:
Q  124 ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca 220  Q
    |||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||  ||   ||||||||||||  |||||||||| ||||    
T  3614665 ttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgt--ttgtacttgttcttgttactgctgttttttaaca 3614762  T
Q  221 tacccgtaacttcaattt 238  Q
    ||||| ||||||||||||    
T  3614763 tacccataacttcaattt 3614780  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 35611882 - 35611702
Alignment:
Q  124 ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca 220  Q
    ||||||||||||| |||   |||| |||||||||||||||||||||||||||||||||||||||  ||   |||||||||||| ||||||||||| ||||    
T  35611882 ttctaatatgctaaaaaaatcatcttcttcatccttaccttattattctcactccacccattgt--ttgtacttgttcttgttattgctgtttttgaaca 35611785  T
Q  221 tacccgtaacttcaatttnnnnnnnnnttccacttttttgaatcgggta-tttgttattgttgtttctgaaactacccattat 302  Q
    ||||| |||||| |||||          |||| ||| |||||| | ||| ||| |||||||||||| ||||||||||||||||    
T  35611784 tacccataactttaatttaaaaaaaaaatccattttgttgaattgagtatttttttattgttgtttttgaaactacccattat 35611702  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 407 - 542
Target Start/End: Complemental strand, 35611578 - 35611443
Alignment:
Q  407 catctccaacaaattcatcacatgggtcactcactgataaatctttttaattcaatttaaattcaaaaccaaacccttctctttcgtggagtttccttca 506  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||||| |||| |||| ||||||||| ||||| |||||||||| |||  ||| |||||    
T  35611578 catctccaacaaattcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttca 35611479  T
Q  507 tgtacaaccatactaccatgttcatcttaatctcat 542  Q
    || | ||||| |  |  |||||||| ||||||||||    
T  35611478 tgaaaaaccagataaaaatgttcatgttaatctcat 35611443  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 491
Target Start/End: Complemental strand, 5568806 - 5568722
Alignment:
Q  407 catctccaacaaattcatcacatgggtcactcactgataaatctttttaattcaatttaaattcaaaaccaaacccttctctttc 491  Q
    ||||||||||||| |||||| |||||||||||||| |||| ||||||| |||| |||| ||||||||| ||||||||||||||||    
T  5568806 catctccaacaaactcatcaaatgggtcactcactaataactctttttcattccatttgaattcaaaatcaaacccttctctttc 5568722  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 542
Target Start/End: Original strand, 3614967 - 3615102
Alignment:
Q  407 catctccaacaaattcatcacatgggtcactcactgataaatctttttaattcaatttaaattcaaaaccaaacccttctctttcgtggagtttccttca 506  Q
    |||||||||||||||||||| ||| ||||||||||| ||| || |||| |||| |||| ||||||||| |||||||||||||||| |||  ||| |||||    
T  3614967 catctccaacaaattcatcaaatgagtcactcactggtaactccttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttca 3615066  T
Q  507 tgtacaaccatactaccatgttcatcttaatctcat 542  Q
    || | ||||| |  |  |||||||| ||||||||||    
T  3615067 tgaaaaaccagataaaaatgttcatgttaatctcat 3615102  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 3614806 - 3614848
Alignment:
Q  259 tgaatcgggtatttgttattgttgtttctgaaactacccattat 302  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  3614806 tgaattgggtattt-ttattgttgtttctgaaactacccattat 3614848  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 5568976 - 5568931
Alignment:
Q  258 ttgaatcgggtatttgtt-attgttgtttctgaaactacccattat 302  Q
    |||||| |||||||| || |||||||||||||||||||||||||||    
T  5568976 ttgaattgggtatttttttattgttgtttctgaaactacccattat 5568931  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 9981888 - 9981706
Alignment:
Q  124 ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca 220  Q
    |||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||  ||   |||||||||||| ||| ||||||| ||||    
T  9981888 ttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgt--ttgtacttgttcttgttattgttgtttttgaaca 9981791  T
Q  221 tacccgtaacttcaattt---nnnnnnnnnttccacttttttgaatcgggtatttgttattgttgtttctgaaactacccattat 302  Q
    ||||| ||||||||||||             |||| ||| |||||| |||||||| |||||||||||||||||||||| ||||||    
T  9981790 tacccataacttcaatttaaaaaaaaaaaaatccattttgttgaattgggtattttttattgttgtttctgaaactacgcattat 9981706  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 407 - 508
Target Start/End: Complemental strand, 9981586 - 9981485
Alignment:
Q  407 catctccaacaaattcatcacatgggtcactcactgataaatctttttaattcaatttaaattcaaaaccaaacccttctctttcgtggagtttccttca 506  Q
    ||||| |||||||||||||| ||||||||||||| ||||| ||||||| |||| |||| ||||||||| |||||||||||||||| |||  ||| |||||    
T  9981586 catcttcaacaaattcatcaaatgggtcactcaccgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttca 9981487  T
Q  507 tg 508  Q
    ||    
T  9981486 tg 9981485  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 446
Target Start/End: Complemental strand, 51541117 - 51541029
Alignment:
Q  357 atccatggatgcacaagcgggtttctcactggggttaaacgccaccatgacatctccaacaaattcatcacatgggtcactcactgataa 446  Q
    |||||||||||||||||| ||||| ||| |||| ||||| ||  | ||| ||||| ||||||||| |||| ||||| |||||||||||||    
T  51541117 atccatggatgcacaagctggtttatcattggg-ttaaatgctgctatgccatcttcaacaaatttatcaaatgggccactcactgataa 51541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 20855344 - 20855392
Alignment:
Q  254 ttttttgaatcgggtatttgttattgttgtttctgaaactacccattat 302  Q
    |||||| ||| || ||||| |||||||||||| ||||||||||||||||    
T  20855344 tttttttaattggttatttcttattgttgtttatgaaactacccattat 20855392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 410 - 508
Target Start/End: Complemental strand, 687 - 589
Alignment:
Q  410 ctccaacaaattcatcacatgggtcactcactgataaatctttttaattcaatttaaattcaaaaccaaacccttctctttcgtggagtttccttcatg 508  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||| ||||||||| |||||||||||||||| |||  ||| |||||||    
T  687 ctccaacaaattcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatg 589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 959 - 844
Alignment:
Q  124 ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca 220  Q
    |||||||||||||||||   |||| ||||||||| |||||||||||||||||||||||||||||  ||   |||||||||||| ||||||||||| ||||    
T  959 ttctaatatgctacaaaaatcatcttcttcatccataccttattattctcactccacccattgt--ttgtacttgttcttgttattgctgtttttgaaca 862  T
Q  221 tacccgtaacttcaattt 238  Q
    ||| | ||||||||||||    
T  861 tactcataacttcaattt 844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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