View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5868_low_4 (Length: 513)
Name: NF5868_low_4
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48512560 - 48512331
Alignment:
| Q |
1 |
acagaacctgaacttgatcatgtaagaatcttatgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatgcaatttcaatttacaatt |
100 |
Q |
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| T |
48512560 |
acagaacctgaacttgatcatgtaagaatcttatgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatgcaatttcaatttacaatt |
48512461 |
T |
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| Q |
101 |
ttcaaaaactaaattcccaaacaataatctaataacactggaaaatatatctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattc |
200 |
Q |
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| T |
48512460 |
ttcaaaaactaaattcccaaacaataatttaataacactggaaaatatatctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattc |
48512361 |
T |
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| Q |
201 |
gttcacctagcttctcttttttcggctatt |
230 |
Q |
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| T |
48512360 |
gttcacctagcttctcttttttcggctatt |
48512331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 308 - 494
Target Start/End: Complemental strand, 48512253 - 48512067
Alignment:
| Q |
308 |
aatatagaaaaggacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaacacatattcatagttgannnnnnngtttaccttt |
407 |
Q |
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| T |
48512253 |
aatatagaaaaggacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaacacatattcatagttgatttttatgtttaccttt |
48512154 |
T |
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| Q |
408 |
gcatgtccagttgaggtggggttgtctcctttggtctttttaggacctttctgccctccaacacctgcctttgtcccaagttcttgt |
494 |
Q |
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| T |
48512153 |
gcatgtccagttgaggtggggttgtctcctttggtctttttaggacctttctgccctccaacacctgcctttgtcccaagttcttgt |
48512067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 4638898 - 4639107
Alignment:
| Q |
33 |
atgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatgcaatttcaattta-------caattttcaaaaacta-------------a |
112 |
Q |
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| T |
4638898 |
atgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatgcaatttcaatttacaatttccaattttcaaaaactaaattcaattcacta |
4638997 |
T |
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| Q |
113 |
attcccaaacaataa-tctaataacactggaaaatata--tctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattcgttcaccta |
209 |
Q |
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| T |
4638998 |
attcccaaattataattttaataacactggaaaatatactactaatttaccttgccaaagggtgaaaca---tgttgtaacgctgcaattcgttcaccaa |
4639094 |
T |
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| Q |
210 |
gcttctctttttt |
222 |
Q |
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|||||| |||||| |
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| T |
4639095 |
gcttctttttttt |
4639107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 4639204 - 4639279
Alignment:
| Q |
308 |
aatatagaaaaggacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaacacatattca |
383 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4639204 |
aatatagaaaaagacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaatacatattca |
4639279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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