View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5869-Insertion-1 (Length: 762)

Name: NF5869-Insertion-1
Description: NF5869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5869-Insertion-1
NF5869-Insertion-1
[»] chr2 (36 HSPs)
chr2 (8-754)||(39215442-39216188)
chr2 (80-754)||(39161724-39162397)
chr2 (80-754)||(39206797-39207470)
chr2 (9-236)||(39369919-39370147)
chr2 (97-752)||(39388628-39389281)
chr2 (9-240)||(39459063-39459295)
chr2 (286-751)||(39197653-39198116)
chr2 (43-240)||(39473409-39473607)
chr2 (122-241)||(39192439-39192558)
chr2 (122-241)||(39198119-39198238)
chr2 (286-453)||(39192266-39192436)
chr2 (80-241)||(39222767-39222929)
chr2 (286-388)||(39222932-39223037)
chr2 (319-461)||(39370254-39370399)
chr2 (63-237)||(39397852-39398027)
chr2 (122-237)||(39468264-39468379)
chr2 (122-210)||(39137807-39137895)
chr2 (580-684)||(39381038-39381142)
chr2 (122-241)||(39414781-39414900)
chr2 (43-174)||(39152429-39152561)
chr2 (592-690)||(39191003-39191101)
chr2 (598-754)||(39370497-39370652)
chr2 (315-452)||(39381275-39381412)
chr2 (126-241)||(39381510-39381625)
chr2 (125-240)||(39421832-39421947)
chr2 (705-754)||(39223284-39223333)
chr2 (618-670)||(39468727-39468779)
chr2 (12-98)||(39414883-39414969)
chr2 (648-751)||(39191972-39192074)
chr2 (315-360)||(39421688-39421733)
chr2 (123-221)||(39494461-39494559)
chr2 (315-352)||(39468448-39468485)
chr2 (705-748)||(39414266-39414309)
chr2 (394-447)||(39223101-39223154)
chr2 (526-555)||(39468634-39468663)
chr2 (526-555)||(39478833-39478862)
[»] chr6 (2 HSPs)
chr6 (80-237)||(16113181-16113339)
chr6 (315-352)||(16113441-16113478)
[»] chr7 (3 HSPs)
chr7 (122-210)||(19807757-19807845)
chr7 (316-412)||(19807963-19808059)
chr7 (31-139)||(19807623-19807732)
[»] chr5 (1 HSPs)
chr5 (315-555)||(33561135-33561380)


Alignment Details
Target: chr2 (Bit Score: 675; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Original strand, 39215442 - 39216188
Alignment:
Q  8 atttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39215442 atttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagacaagtt 39215541  T
Q  108 gagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaa 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215542 gagagctttgaatcaaaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaa 39215641  T
Q  207 aagagaagcagtttggaggacaagtcaaggatcctaaattaaagttgaaaaaattcgatttgcgaccgacgaagcttgggtcaaggaaaaaatatattga 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39215642 aagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattga 39215741  T
Q  307 agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215742 agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgat 39215841  T
Q  407 ctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaattttgtctggttttcatatcacacccacacattgtca 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  39215842 ctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaattttttctagttttcatatcacacccacacattgtca 39215941  T
Q  507 aacaaatttgtatggtatatttcacccttgaacattttatgaatctctttactgcnnnnnnnnnnnnctcacgtttttattcatggctaaagtttaatta 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  39215942 aacaaatttgtatggtatatttcacccttgaacattttatgaatctctttactgc-aaaaaaaaaaactcacgtttttattcatggctaaagtttaatta 39216040  T
Q  607 taatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgacaaaat 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39216041 taatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttcaaatagtgtaggttcaacatccctcgacaaaat 39216140  T
Q  707 tgaggggcacttaatagtccaattagtgcaactatttctagtcttgtt 754  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216141 tgaggggcacttaatagtccaattagtgcaactatttctagtcttgtt 39216188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 80 - 754
Target Start/End: Original strand, 39161724 - 39162397
Alignment:
Q  80 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaag-agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 178  Q
    |||||| ||||| |||||||| |||||||||  |||  |||||||  |||| |||||||||||||||||||| ||||| |||   |||||| ||||| ||    
T  39161724 aaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctc 39161823  T
Q  179 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaaattaaagttgaaaaaattcgatttgcgaccgacga 278  Q
    |||||| | |  |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||| | |||| |||| ||||| |||   | ||  | |     
T  39161824 aaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaagg 39161923  T
Q  279 agcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctc 375  Q
    ||| || ||||||||||||||||||   ||| |||| | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| ||||||     
T  39161924 agcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttcctt 39162023  T
Q  376 ttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaattttgt 475  Q
    ||||||||||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| |||||||| ||||| |  |||  || |    
T  39162024 ttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtcatttgaaaagctttt 39162123  T
Q  476 ctggttttcatatcacacccacacattgtcaaacaaatttgtatggtatatttcacccttgaacattttatgaatctctttactgcnnnnnnnnnnnnct 575  Q
    |  | |||||||||||||||| ||  | |||||||||| || ||  ||| ||| |||||||||| ||||||| ||||||| | ||             ||    
T  39162124 ccagatttcatatcacacccagac--tttcaaacaaatctgaattatat-ttttacccttgaactttttatgtatctcttaagtg-------aaaaacct 39162213  T
Q  576 cacg---tttttattcatggctaaagtttaattataatcttatg---atactgctaatgaaagattagtatattgatttagttttaatttttcaagtata 669  Q
    || |   ||||||| |||||||| ||||| |||||||| |||||    ||||||||||||| |||||||||||| || ||||||||||||||||| ||||    
T  39162214 catgtgttttttatccatggctatagttttattataatattatggtactactgctaatgaaggattagtatattaatgtagttttaatttttcaattata 39162313  T
Q  670 tttaaaatagtgtaggttcaacatccctcgacaaa-attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtt 754  Q
    ||| ||| | |||| |||||| || |   |||||| |||| |||| |||||||||||| |||||||||||||||  ||||||||||    
T  39162314 tttcaaaaactgtatgttcaatattc--tgacaaacattgcggggtacttaatagtcctattagtgcaactattaatagtcttgtt 39162397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 80 - 754
Target Start/End: Complemental strand, 39207470 - 39206797
Alignment:
Q  80 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaag-agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 178  Q
    |||||| ||||| |||||||| |||||||||  |||  |||||||  |||| |||||||||||||||||||| ||||| |||   |||||| ||||| ||    
T  39207470 aaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctc 39207371  T
Q  179 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaaattaaagttgaaaaaattcgatttgcgaccgacga 278  Q
    |||||| | |  |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||| | |||| |||| ||||| |||   | ||  | |     
T  39207370 aaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaagg 39207271  T
Q  279 agcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctc 375  Q
    ||| || ||||||||||||||||||   ||| |||| | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| ||||||     
T  39207270 agcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttcctt 39207171  T
Q  376 ttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaattttgt 475  Q
    ||||||||||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| |||||||| ||||| |  |||  || |    
T  39207170 ttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtcatttgaaaagctttt 39207071  T
Q  476 ctggttttcatatcacacccacacattgtcaaacaaatttgtatggtatatttcacccttgaacattttatgaatctctttactgcnnnnnnnnnnnnct 575  Q
    |  | |||||||||||||||| ||  | |||||||||| || ||  ||| ||| |||||||||| ||||||| ||||||| | ||             ||    
T  39207070 ccagatttcatatcacacccagac--tttcaaacaaatctgaattatat-ttttacccttgaactttttatgtatctcttaagtg-------aaaaacct 39206981  T
Q  576 cacg---tttttattcatggctaaagtttaattataatcttatg---atactgctaatgaaagattagtatattgatttagttttaatttttcaagtata 669  Q
    || |   ||||||| |||||||| ||||| |||||||| |||||    ||||||||||||| |||||||||||| || ||||||||||||||||| ||||    
T  39206980 catgtgttttttatccatggctatagttttattataatattatggtactactgctaatgaaggattagtatattaatgtagttttaatttttcaattata 39206881  T
Q  670 tttaaaatagtgtaggttcaacatccctcgacaaa-attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtt 754  Q
    ||| ||| | |||| |||||| || |   |||||| |||| |||| |||||||||||| |||||||||||||||  ||||||||||    
T  39206880 tttcaaaaactgtatgttcaatattc--tgacaaacattgcggggtacttaatagtcctattagtgcaactattaatagtcttgtt 39206797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 39369919 - 39370147
Alignment:
Q  9 tttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttg 108  Q
    |||||||||| |||| ||| |||||||||||| |||||||||||  |||| || ||||||||| |||  | | ||| |||||||||||||| |||||| |    
T  39369919 tttaaaggtcgagtgaaggtgcttgaatcaaaggaggaggaatttgaaggtcgagttaaggagttcaagtcagaaaggaagcaatttgaaacccaagtcg 39370018  T
Q  109 agagctttgaatc-aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaa 207  Q
    ||  |||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | |||||    
T  39370019 agcacttcaaatcgaaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaa 39370118  T
Q  208 agagaagcagtttggaggacaagtcaagg 236  Q
    |||||||||||||||| ||||||||||||    
T  39370119 agagaagcagtttggaagacaagtcaagg 39370147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 97 - 752
Target Start/End: Complemental strand, 39389281 - 39388628
Alignment:
Q  97 aaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaagga 195  Q
    ||||||||||||||  |||  ||||||| ||| ||| |||| || |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||    
T  39389281 aaagccaagttgaggacttcaaatcaaaagagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaagga 39389182  T
Q  196 gttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaaattaaagttgaaaaaattcgatttgcgaccgacgaagcttgggtcaaggaaa 295  Q
    | |||| |||||||| |||||||||| ||| |||||||| |||||| | | |||| |||| ||||| |||   | |   | | |||  | ||||||||||    
T  39389181 gctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaa 39389082  T
Q  296 aaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca-- 390  Q
    |||||| ||||    |||| | |||| |||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |      
T  39389081 aaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatatt 39388982  T
Q  391 atttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaat-tttgtctggttttcatatc 489  Q
     |||||||| |  ||||||| || ||   || |||  |||||||||||||||||||| |||||| | ||||  |||||||  || ||  | |||||||||    
T  39388981 ttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtcatagtcaatttgaaatgcttttccagatttcatatc 39388882  T
Q  490 acacccacacattgtcaaacaaatttgtatggtatat-ttcacccttgaacattttatgaatctctttactgcnnnnnnnnnnnnctcacgt-ttttatt 587  Q
    ||||||| | | | || ||| |||||| |   |||||  |||||||||||||||||||| |||||||   ||             |||   | ||||||     
T  39388881 acacccaaagactttcgaactaatttgca--atatatcctcacccttgaacattttatgtatctcttaggtg-------aaaaaactcgtattttttatc 39388791  T
Q  588 catggctaaagtttaattataatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttaaaatagtgtaggtt 687  Q
    ||||||||| |||| | |||||| ||||| ||||| |||||||||||||||||||| || || |||||||||||||||||||||  ||| ||||||||||    
T  39388790 catggctaaggttttactataatattatggtactgataatgaaagattagtatattaatgtaattttaatttttcaagtatattgcaaaaagtgtaggtt 39388691  T
Q  688 caacatccctcgacaaaattgaggggcacttaatagtccaattagtgcaactatttctagtcttg 752  Q
    ||| || |   ||||| |||||||||||||||||||||| || ||||| ||||||||||||||||    
T  39388690 caatattc--tgacaacattgaggggcacttaatagtcctatcagtgctactatttctagtcttg 39388628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 39459063 - 39459295
Alignment:
Q  9 tttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttg 108  Q
    ||||||||||||| | ||||| ||||||||||| |||||||||||||||| | ||||||| |||||| || ||||||||||||||||||||||||  |||    
T  39459063 tttaaaggtcaagggaaggagtttgaatcaaataaggaggaattcaaaggtcaggttaagcagctcaattcaaaaaagaagcaatttgaaagccagtttg 39459162  T
Q  109 agagctttgaa-tcaaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaa 207  Q
    ||  |||  || | ||||||||||||||||||| || | |||||||| | ||     |||||||||||||||||||||  || || ||| ||||||||||    
T  39459163 aggacttcaaattaaaagagaagcaatttgaagaacagcggaaagaattcgatgctgaagagaataagttcaaagtactagtgaaagagctcaagttaaa 39459262  T
Q  208 agagaagcagtttggaggacaagtcaaggatcc 240  Q
    ||| ||||| |||| ||||||||||||||||||    
T  39459263 agacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 286 - 751
Target Start/End: Complemental strand, 39198116 - 39197653
Alignment:
Q  286 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 382  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  383 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattg-aaattttgtctggtt 481  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| ||||| || ||||  ||| |||  || ||  |||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttcccgtt 39197917  T
Q  482 ttcatatcacacccacacattgtcaaacaaatttgtatggtatatt-tcacccttgaacattttatgaatctctttactgcnnnnnnnnnnnnctcacgt 580  Q
    ||||| ||||| ||||| | |||||||| |||||  ||  ||| || ||||||||||||||| |||| ||||||| | ||              |    |    
T  39197916 ttcatttcacatccacagactgtcaaactaatttcgat--tatcttgtcacccttgaacattatatgtatctcttaagtgaaaaaactctggtgt----t 39197823  T
Q  581 ttttattcatggctaaagtttaattataatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttaaaatagt 680  Q
    |||||| ||| |||||  ||| |||||||| ||||| || ||||| |||||| |||||||||| || ||||||||||||||||||||||||  ||| |||    
T  39197822 ttttatacattgctaagtttttattataatattatgttattgctattgaaaggttagtatattaatgtagttttaatttttcaagtatattgcaaaaagt 39197723  T
Q  681 gtaggttcaacatccctcgaca-aaattgaggggcacttaatagt-ccaattagtgcaactatttctagtctt 751  Q
    |||||||||| || |   |||| | ||| |||||||| ||||||| || ||||||||||||||||||||||||    
T  39197722 gtaggttcaatattc--tgacagacattaaggggcac-taatagtccctattagtgcaactatttctagtctt 39197653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 39473607 - 39473409
Alignment:
Q  43 aggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatcaa-agagaagcaatttgaagg 141  Q
    |||||||||||||||| |||||||||||||| |  | |||||||||||||||| ||| | | ||||||   ||  |||||| || ||||||||||||||     
T  39473607 aggaggaattcaaaggtcgggttaaggagcttaaataaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaaga 39473508  T
Q  142 acggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 240  Q
    ||| ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| |||| ||||| |||||||    
T  39473507 acgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 39192558 - 39192439
Alignment:
Q  122 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 221  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39192558 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39192459  T
Q  222 gaggacaagtcaaggatcct 241  Q
     ||||| |||||||||||||    
T  39192458 aaggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 39198238 - 39198119
Alignment:
Q  122 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 221  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39198238 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39198139  T
Q  222 gaggacaagtcaaggatcct 241  Q
     ||||| |||||||||||||    
T  39198138 aaggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 286 - 453
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  286 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 382  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  383 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 453  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 80 - 241
Target Start/End: Original strand, 39222767 - 39222929
Alignment:
Q  80 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 178  Q
    |||||||||||| || ||||||||||| |||   ||| ||||||| |||||||||||||||| ||| |||||  ||||||||| | ||||||||||||||    
T  39222767 aaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttc 39222866  T
Q  179 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 241  Q
    |||| | |||| |||||| |||| || ||||| |||  ||||| |||||||||||||||||||    
T  39222867 aaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaaggacaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  286 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 382  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  383 tgatga 388  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 461
Target Start/End: Original strand, 39370254 - 39370399
Alignment:
Q  319 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 415  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  416 tgtttaaaaatatttttaatcatgttaatgttttatgtctttgtca 461  Q
    | | |||||| ||| ||||||||||||||||| |||||||| ||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtcttggtca 39370399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 39398027 - 39397852
Alignment:
Q  63 gttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatc-aaagagaagcaatttgaaggacggtggaaagaacttgagt 161  Q
    ||||||||||||   ||| |||| ||||| ||||||||||||||||||   ||  |||| ||||| |||||| |||||| |||||||||| |||||||||    
T  39398027 gttaaggagctcgaattacaaaataagcactttgaaagccaagttgaggatttcaaatcaaaagataagcaaattgaagaacggtggaaaaaacttgagt 39397928  T
Q  162 taaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 237  Q
     |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| ||| ||| | |||||||||    
T  39397927 caaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtcgagtcaagga 39397852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 39468264 - 39468379
Alignment:
Q  122 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 221  Q
    ||||| ||||||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| |||    
T  39468264 aaagataagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattg 39468363  T
Q  222 gaggacaagtcaagga 237  Q
     |||||||||||||||    
T  39468364 aaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 39137807 - 39137895
Alignment:
Q  122 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 210  Q
    |||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137807 aaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 580 - 684
Target Start/End: Complemental strand, 39381142 - 39381038
Alignment:
Q  580 tttttattcatggctaaagtttaattataatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttaaaatag 679  Q
    ||||||||||||||||| | ||||||||||| ||||| |||||||| ||||||| ||||||| | || ||||||||||||||||||||||||  |||| |    
T  39381142 tttttattcatggctaaggcttaattataatattatggtactgctagtgaaagagtagtatagtaatgtagttttaatttttcaagtatattgcaaatgg 39381043  T
Q  680 tgtag 684  Q
    |||||    
T  39381042 tgtag 39381038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 39414900 - 39414781
Alignment:
Q  122 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 221  Q
    ||||||||||||||||||| ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| |||||||    
T  39414900 aaagagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttg 39414801  T
Q  222 gaggacaagtcaaggatcct 241  Q
     ||||||||| |||||||||    
T  39414800 aaggacaagttaaggatcct 39414781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 39152429 - 39152561
Alignment:
Q  43 aggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatc-aaagagaagcaatttgaagg 141  Q
    |||||||||||||||| | |||||||||||| |  | |||||||||| ||||||||| ||| ||||||  |||  || | ||||||||||||||||||      
T  39152429 aggaggaattcaaaggtcaggttaaggagcttaaatcaaaaaagaagaaatttgaaatccaggttgaggacttcaaaacaaaagagaagcaatttgaaaa 39152528  T
Q  142 acggtggaaagaacttgagttaaaagagaataa 174  Q
    |||||||||||| || |||| ||||||||||||    
T  39152529 acggtggaaagagctcgagtcaaaagagaataa 39152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 690
Target Start/End: Complemental strand, 39191101 - 39191003
Alignment:
Q  592 gctaaagtttaattataatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttaaaatagtgtaggttcaa 690  Q
    ||||| |||| |||||||| ||||| || ||||| |||||| |||||||||| || || |||||||||||||||||||||  ||| |||||||||||||    
T  39191101 gctaaggttttattataatattatgttattgctattgaaaggttagtatattaatgtatttttaatttttcaagtatattgcaaaaagtgtaggttcaa 39191003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 598 - 754
Target Start/End: Original strand, 39370497 - 39370652
Alignment:
Q  598 gtttaattataatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccct 697  Q
    ||||||||||||  || || |||||||||||||  |||  |||||| || ||||||| || |||| ||||| ||  ||| ||||||||||||| ||   |    
T  39370497 gtttaattataagattgtggtactgctaatgaataatttatatattaatgtagttttgatctttctagtattttgcaaaaagtgtaggttcaatatt--t 39370594  T
Q  698 cgacaaa-attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtt 754  Q
     |||||| |||||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  39370595 tgacaaacattgaggggcacttaataatcctattagtgcaactacttctagtcttgtt 39370652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 315 - 452
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  315 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 414  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  415 ttgtttaaaaatatttttaatcatgttaatgttttatg 452  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 39381625 - 39381510
Alignment:
Q  126 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 225  Q
    ||||| ||||||||| |||   ||||||||  || | |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |    
T  39381625 agaagaaatttgaagaacgaatgaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaag 39381526  T
Q  226 acaagtcaaggatcct 241  Q
    ||||| ||||||||||    
T  39381525 acaagacaaggatcct 39381510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 39421947 - 39421832
Alignment:
Q  125 gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 224  Q
    |||||| ||||||||| ||  |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  |||||||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  225 gacaagtcaaggatcc 240  Q
     || ||||||||||||    
T  39421847 cactagtcaaggatcc 39421832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 705 - 754
Target Start/End: Original strand, 39223284 - 39223333
Alignment:
Q  705 attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtt 754  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  39223284 attgagaggcacttaatagtccaattagtgcaactatttttagtcttgtt 39223333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 670
Target Start/End: Original strand, 39468727 - 39468779
Alignment:
Q  618 tactgctaatgaaagattagtatattgatttagttttaatttttcaagtatat 670  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  39468727 tacttctaatgatagattagtatattaatttagttttaatttttcaagtatat 39468779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 39414969 - 39414883
Alignment:
Q  12 aaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaa 98  Q
    |||||||||||| ||||| |||||||||| |||||||| |||||||| |  |||||||| ||||  | |||| ||||||||||||||    
T  39414969 aaaggtcaagtgaaggagtttgaatcaaaggaggaggagttcaaaggtcaagttaaggaactcaaatcaaaagagaagcaatttgaa 39414883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 648 - 751
Target Start/End: Complemental strand, 39192074 - 39191972
Alignment:
Q  648 tagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgacaaa-attgaggggcacttaatagtccaattagtgcaactatttcta 746  Q
    ||||||||||||||||||||||||  ||| || |||||||||| || |   || | | ||| |||||||||||||||||| ||||||||||||||||||     
T  39192074 tagttttaatttttcaagtatattgcaaaaagggtaggttcaatattct--gatagacattaaggggcacttaatagtcctattagtgcaactatttctc 39191977  T
Q  747 gtctt 751  Q
    |||||    
T  39191976 gtctt 39191972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  315 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 360  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 39494559 - 39494461
Alignment:
Q  123 aagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 221  Q
    ||||||| ||||||||||||||  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494559 aagagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  315 aatcgggtaaatgttcttattcatctagtttattgaaa 352  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

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Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 748
Target Start/End: Complemental strand, 39414309 - 39414266
Alignment:
Q  705 attgaggggcacttaatagtccaattagtgcaactatttctagt 748  Q
    |||||||||||||||||||||| || ||||||||||||| ||||    
T  39414309 attgaggggcacttaatagtcctatcagtgcaactatttatagt 39414266  T

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Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  394 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 447  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

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Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 555
Target Start/End: Original strand, 39468634 - 39468663
Alignment:
Q  526 tttcacccttgaacattttatgaatctctt 555  Q
    ||||||||||||||||||||||||||||||    
T  39468634 tttcacccttgaacattttatgaatctctt 39468663  T

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Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 555
Target Start/End: Complemental strand, 39478862 - 39478833
Alignment:
Q  526 tttcacccttgaacattttatgaatctctt 555  Q
    ||||||||||||||||||||||||||||||    
T  39478862 tttcacccttgaacattttatgaatctctt 39478833  T

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Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 16113181 - 16113339
Alignment:
Q  80 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 178  Q
    |||||| ||||| || |||||||||||||||   ||  ||||||| || ||||||||||||| ||||||||||||||| || | |||||||||| |||||    
T  16113181 aaaaaataagcatttggaaagccaagttgagtatttcaaatcaaacgataagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttc 16113280  T
Q  179 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 237  Q
    |||||| |||  |||||| |||||||||||||||||||| ||| || ||||||||||||    
T  16113281 aaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtacaagtcaagga 16113339  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  315 aatcgggtaaatgttcttattcatctagtttattgaaa 352  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 19807757 - 19807845
Alignment:
Q  122 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 210  Q
    |||||||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807757 aaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 412
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  316 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 412  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 19807623 - 19807732
Alignment:
Q  31 ttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatc-aaagagaa 129  Q
    |||||||||| || ||||  ||| |||| || ||||||||| |||  | ||||||||||||||| |||| ||||||||||  |||  |||| ||||||||    
T  19807623 ttgaatcaaaggatgaggggttcgaaggtcgagttaaggagttcaaataaaaaaagaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaa 19807722  T
Q  130 gcaatttgaa 139  Q
    |||| |||||    
T  19807723 gcaacttgaa 19807732  T

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Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 315 - 555
Target Start/End: Original strand, 33561135 - 33561380
Alignment:
Q  315 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 410  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  411 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctttgtcatattgaaa--ttttgtctggttttcatatcacacccacacattgtcaa 507  Q
     || |  |||||| | |||||||||||||||||||||| |||||||| ||||  ||||||   |||  || | |||||||||||||||||| | | |||     
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtcttggtcaatttgaaaagcttttact-gatttcatatcacacccacagactttcag 33561333  T
Q  508 acaaatttgtatggtatatttcacccttgaacattttatgaatctctt 555  Q
    || ||| || ||  ||| |||||||||||||||||||||| |||||||    
T  33561334 actaatctggattatat-tttcacccttgaacattttatgtatctctt 33561380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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