View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5869-Insertion-3 (Length: 456)
Name: NF5869-Insertion-3
Description: NF5869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5869-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 40441440 - 40441880
Alignment:
| Q |
9 |
atattttcatcaagagagtattctgaaggcagtggaaatcatcatgatggatggtgagaaagagcttgggaagagcataagagaaaaccacgtgaaatgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
40441440 |
atattttcatcaagagagtattctgaaggcagtgaaaatcatcatgatggatggtgagaaagagcctgggaagagcataagagaaaaccacatgaaatgg |
40441539 |
T |
|
| Q |
109 |
aggaagtttatgttagataaagaaattcagaataaatttatcattgatctggttgctcagctgaagtctttggcctaatgcatgattggaattacggtga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40441540 |
aggaagtttatgttagataaagaaattcagaataaatttatcattgatctggttgctcagctgaagtctttggcctaatgcatgattggaattacggtga |
40441639 |
T |
|
| Q |
209 |
gtttcatgaaataatttgtggtggcgtgattttgttgaagctctaaagggtagctttactaaatcgcgatggttcagcttgattttgttaaactcgtcgc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40441640 |
gtttcatgaaataatttgtggtggcgtgattttgttgaagctctaaagggtagctttactaaatcgcgatggttcaacttgattttgttaaactcgtcgc |
40441739 |
T |
|
| Q |
309 |
gaatttaaacatgcatctccactccctcttgatggaatggattatttgtgttctatattggttctgtttttctttgtttacatgtttgtttcagattccg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40441740 |
gaatttaaacatgcatctccactccctcttgatggaatggattatttgtgttctatattggttctgtttttctttgtttacatgtttgtttcagtttccg |
40441839 |
T |
|
| Q |
409 |
gcacctaatgttgttctaattgtaacaattttgttcttgtt |
449 |
Q |
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| T |
40441840 |
gcacctaatgttgttctaattgtaacaattttattcatgtt |
40441880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 40443865 - 40444071
Alignment:
| Q |
9 |
atattttcatcaagagagtattctgaaggcagtggaaatcatcatgatggatggtgagaaagagcttgggaagagcataagagaaaaccacgtgaaatgg |
108 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||| ||| |||||| || ||| ||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
40443865 |
atattttcataaagaagatattttgaaggcagtgaaaactatcatggtgaatgatgagaaagagccggggaagagcataagagaaaaccacatgaaatgg |
40443964 |
T |
|
| Q |
109 |
aggaagtttatgttagataaagaaattcagaataaatttatcattgatctggttgctcagctgaagtctttggcctaatgcatgattggaattacggtga |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||| |
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| T |
40443965 |
aggaagtttatgttagataaagaaaatcagaataaatttatcattgatctggtttctcagctgaagtctttggcttaatgcatgattggaatcatggtga |
40444064 |
T |
|
| Q |
209 |
gtttcat |
215 |
Q |
| |
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|||||| |
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|
| T |
40444065 |
ttttcat |
40444071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 21876188 - 21876285
Alignment:
| Q |
85 |
ataagagaaaaccacgtgaaatggaggaagtttatgttagataaagaaattcagaataaatttatcattgatctggttgctcagctgaagtctttggc |
182 |
Q |
| |
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||||||||||| || ||||||||||| ||||| | || ||||| |||||||||| ||||| |||| |||||| |||| | | ||||||||||||| |
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| T |
21876188 |
ataagagaaaatcatatgaaatggagggagtttctattggataagaaaattcagaacaaattcatcacagatctgattgcgcggttgaagtctttggc |
21876285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 25719779 - 25719747
Alignment:
| Q |
233 |
cgtgattttgttgaagctctaaagggtagcttt |
265 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
25719779 |
cgtgattttgttgaagctctaaagtgtagcttt |
25719747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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