View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5869-Insertion-7 (Length: 194)

Name: NF5869-Insertion-7
Description: NF5869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5869-Insertion-7
NF5869-Insertion-7
[»] chr7 (3 HSPs)
chr7 (10-186)||(4859027-4859203)
chr7 (58-143)||(2619453-2619538)
chr7 (58-143)||(43223480-43223565)
[»] scaffold0187 (1 HSPs)
scaffold0187 (56-143)||(27848-27934)
[»] chr1 (1 HSPs)
chr1 (56-143)||(37911143-37911229)
[»] chr3 (2 HSPs)
chr3 (58-143)||(39727078-39727163)
chr3 (58-140)||(4770984-4771066)
[»] chr2 (2 HSPs)
chr2 (76-143)||(27592299-27592366)
chr2 (58-143)||(7457215-7457300)
[»] scaffold0006 (1 HSPs)
scaffold0006 (58-143)||(114994-115079)
[»] chr6 (1 HSPs)
chr6 (58-143)||(693187-693272)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 4e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 4859027 - 4859203
Alignment:
Q  10 atttttgtagatacaggcatattattgactacgcaaaaaaccgctgttggtataggtagtttgtcctatacctatggcaaaataacatttacatacggtt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  4859027 atttttgtagatacaggcatattattgactacgcaaaaaaccgctgttggtataggtagtttgtcctatacctacggcaaaataacatttacgtacggtt 4859126  T
Q  110 ttctgctgtcattaaaagtcaagtttcttgtagtacctcatttctctcatttattccaccaccagaagctctcttgt 186  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4859127 ttctgctgtcattaaaagttaagtttcttgtactacctcatttctctcatttattccaccaccagaagctctcttgt 4859203  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 2619538 - 2619453
Alignment:
Q  58 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| |||||||||  ||||||| |||| |||||||||||||||||    
T  2619538 ggtataggtaatttggcatatacctacggtaaaaggatatttacctacggtttttggctgtcactaaatgtcaagtttcttgtagt 2619453  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 43223480 - 43223565
Alignment:
Q  58 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||| ||||||| |||| || ||||||||||||||    
T  43223480 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggttttcggctgtcactaaatgtgaagtttcttgtagt 43223565  T

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Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 27848 - 27934
Alignment:
Q  56 ttggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||||| |||| |||||||||||||| | |  |||||||| |||||||||  ||||||| |||| ||| |||||||||||||    
T  27848 ttggtataggtattttggcctatacctatggctagaagacatttacctacggtttttggctgtcactaaatgtc-agtttcttgtagt 27934  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 37911229 - 37911143
Alignment:
Q  56 ttggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||||| |||| |||||||||||||| | |  |||||||| |||||||||  ||||||| |||| ||| |||||||||||||    
T  37911229 ttggtataggtattttggcctatacctatggctagaagacatttacctacggtttttggctgtcactaaatgtc-agtttcttgtagt 37911143  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 39727078 - 39727163
Alignment:
Q  58 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||| ||||||| |||| |||||||||||||||||    
T  39727078 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggttttcggctgtcactaaatgtcaagtttcttgtagt 39727163  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 4770984 - 4771066
Alignment:
Q  58 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgt 140  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| |||||||||  ||||||| |||| ||||||||||||||    
T  4770984 ggtataggtaatttggcatatacctacggtaaaaggatatttacctacggtttttggctgtcactaaatgtcaagtttcttgt 4771066  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 27592366 - 27592299
Alignment:
Q  76 tatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||| || |||| ||||| ||| || ||||||| ||||||| |||||| |||||||||||||||    
T  27592366 tatacctacggtaaaagaacatctacctatggttttcggctgtcactaaaaggcaagtttcttgtagt 27592299  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 7457215 - 7457300
Alignment:
Q  58 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||  ||||||| |||| |||||||||||||||||    
T  7457215 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggtttttggctgtcactaaatgtcaagtttcttgtagt 7457300  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 114994 - 115079
Alignment:
Q  58 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||| |||| | || ||||| || ||||  | |||||| || ||||||| ||||||| |||| |||||||||||||||||    
T  114994 ggtataggtaatttggcatacacctacggtaaaaggatatttacctatggttttcggctgtcactaaatgtcaagtttcttgtagt 115079  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 693272 - 693187
Alignment:
Q  58 ggtataggtagtttgtcctatacctatggcaaaataacatttacatacggttttctgctgtcattaaaagtcaagtttcttgtagt 143  Q
    |||||||||| |||| | |||||||| || ||||  | |||||| || ||||||| ||||||| | || |||||||||||||||||    
T  693272 ggtataggtaatttggcatatacctacggtaaaaggatatttacctatggttttcggctgtcactgaatgtcaagtttcttgtagt 693187  T

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