View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5870-Insertion-1 (Length: 980)
Name: NF5870-Insertion-1
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5870-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 846
Target Start/End: Original strand, 4927816 - 4928652
Alignment:
| Q |
8 |
accaataactttgatgaaaatcgaaaaattggagaagtaatgggcgatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4927816 |
accaataactttgatgaaaatcgaaaaattggaaaagtaatgggcgatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatag |
4927915 |
T |
|
| Q |
108 |
cattgttgcggataacaaatacattcatggaacggcatttcaagaatgaaattgaactccattgccagctttatcacccaaatttgatatctttgatagg |
207 |
Q |
| |
|
||||||||||||||||| || ||| | || || ||||||||||||||| |||| || |||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
4927916 |
cattgttgcggataacagatgtatttaggggacaaggtttcaagaatgaaatagaacacctctgccagctttgtcacccaaatttgatatcttttatagg |
4928015 |
T |
|
| Q |
208 |
attttgtgaccnnnnnnntgaggaaattctcgtgtataaaaatgatgaaatggtcaatggcactctccatgatcacttaggttcaaaggatatggaatca |
307 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| |
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|
| T |
4928016 |
attttgtgaccaaaaaaataagaaaattctcgtgtataaaaaagatgaaatggtcaatggcactctccaagatcacttaggttcgagggatatggaatca |
4928115 |
T |
|
| Q |
308 |
ctctcgtggnnnnnnnggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaa |
407 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4928116 |
ctctcgtggaagaaaaggcttgaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaa |
4928215 |
T |
|
| Q |
408 |
agccagagaacattcttttggataacaatatggcaccaaaactctcgcaatttggatcatccgtacaagggaagctttctaaatcggagtcaataccaat |
507 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4928216 |
ttccacagaacattcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttctaaatcggagtcaataccaat |
4928315 |
T |
|
| Q |
508 |
tgtagtcaacgtttgtggtaaattatgttcttttatttttatagtaaacattcaaattagttatgcatattcttattcacccatcaacaaagggtgagtg |
607 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4928316 |
tgtagtccgtatttgtggtaaattatgttcttttatttttatagtaaacaataaaattagttatgcatattcttattcacccatcaataaagggtgagtg |
4928415 |
T |
|
| Q |
608 |
gaaattgtccatctgaattcaataatttgtcttcaattgtttataacataaacggtggaatacaaattaatagttttgaatggataatataacatctaca |
707 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4928416 |
gaaattatccatctgaattcaataatttgtcttcaattgtttataacataaacagtggaatacaaattaatagttttgaatggataatataacatctaca |
4928515 |
T |
|
| Q |
708 |
attcctcatcatgatannnnnnnnnnnnnnngttctagtagtctagtgtctaaacttcaccttttttaaggtgaataagttaattgcctgacttgatgca |
807 |
Q |
| |
|
|||||||| || || ||| | |||||||||||||||||||||||||||| |||||||||||| || |||||| || ||| || |
|
|
| T |
4928516 |
attcctcaccacaat---tttttttttcttttttcaaatagtctagtgtctaaacttcacctttttcaaggtgaataagctatttgcctaacccgataca |
4928612 |
T |
|
| Q |
808 |
taggttatattttatattag-tttaattcaaccttacaaa |
846 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
4928613 |
taggatatattttatgttagttttaattcaacctaacaaa |
4928652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 518
Target Start/End: Original strand, 4921574 - 4922085
Alignment:
| Q |
8 |
accaataactttgatgaaaatcgaaaaattggagaagtaatgggcgatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatag |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4921574 |
accaataactttgataaaaatcgaaaaattggacaagtaaactacaatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatag |
4921673 |
T |
|
| Q |
108 |
cattgttgcggataacaaatacattcatggaacggcatttcaagaatgaaattgaactccattgccagctttatcacccaaatttgatatctttgatagg |
207 |
Q |
| |
|
||||||||||||||| | |||||| |||| || ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
4921674 |
cattgttgcggataaaagatacatacatgaaagaaacgttcaagaatgaaattgaactccactgccagatttgtcatccaaatttgatatctttgatagg |
4921773 |
T |
|
| Q |
208 |
attttgtgaccnnnnnnntgaggaaattctcgtgtataaaaatgatgaaatggtcaatggcactctccatgatcacttaggttcaaaggatatggaatca |
307 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||| ||| | || ||| |
|
|
| T |
4921774 |
attttgtgaccaaaaaaatgagaaaattctcgtgtataaaaaagatgaaatggtcaatggctctctccgtgatcacttatgttcaagggacacggtttca |
4921873 |
T |
|
| Q |
308 |
ctctcgtggnnnnnnn-ggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgta |
406 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4921874 |
ctctcttggaaaaaaaaggcttgaaatatgcattggagctgcaaaaggactgcactaccttcacactggagcaaagcgcccgattttccaccgtgacgta |
4921973 |
T |
|
| Q |
407 |
aagccagagaacattcttttggataacaatatggcaccaaaactctcgcaatttggatcatccgtacaagggaagctttctaaatcggagtcaataccaa |
506 |
Q |
| |
|
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4921974 |
aagccttacagcattcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaa |
4922073 |
T |
|
| Q |
507 |
ttgtagtcaacg |
518 |
Q |
| |
|
||| |||||||| |
|
|
| T |
4922074 |
ttgaagtcaacg |
4922085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 62 - 569
Target Start/End: Complemental strand, 4908340 - 4907836
Alignment:
| Q |
62 |
tacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatggaacggcatttcaagaatgaaattg |
161 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||| |||||||||||||||| || ||||| | | ||| ||| | ||| || | |||||||| ||||||| |
|
|
| T |
4908340 |
tacaaaggttatctcaaacataatggtgaaactgattatccaatagcagtgaaacggatgatacatatatttaatgaatggaagttcaagaaggaaattg |
4908241 |
T |
|
| Q |
162 |
aactccattgccagctttatcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgaggaaattctcgtgtataaaaatgatgaaatggt |
261 |
Q |
| |
|
||||| | ||||||||| ||||||||||||||| ||||| |||||||| ||||||| |||| ||||||| |||||| || | ||| |
|
|
| T |
4908240 |
aactcaactgccagcttcatcacccaaatttgacgtcttttataggattctgtgaccacaagtatgagaaaattcttgtgtat------gagtacatgtc |
4908147 |
T |
|
| Q |
262 |
caatggcactctccatgatcacttaggttcaaaggatatggaatcactctcgtggnnnnnnnggctagaaatatgcattggagctgcaaaaggactacac |
361 |
Q |
| |
|
||||||| ||||| |||||||| || || | ||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4908146 |
caatggctctctctatgatcacctacttttgagggatatggaatcattgtcatggaagaaaaggctagaaatatgcattggagctgcaaaaggactacac |
4908047 |
T |
|
| Q |
362 |
tatcttcacactggaacaaagcgtccgattttccaccgtgacgtaaagccagagaacattcttttggataacaatatggcaccaaaactctcgcaatttg |
461 |
Q |
| |
|
|| |||||||||||| ||||||| | ||||| ||| ||||| ||||||| | | ||||||||| ||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
4908046 |
taccttcacactggagcaaagcgcgcaatttttcactgtgacataaagcctcaaaccattcttttagataagaatatggtaccaaaactctcgcatcttg |
4907947 |
T |
|
| Q |
462 |
gatcatccgtacaagggaagctttctaaatcggagtcaataccaattgtagtcaac---gtttgtggtaaattatgttcttttatttttatagtaaacat |
558 |
Q |
| |
|
||| ||| |||||||||||||| |||| || || ||| |||| ||| ||||||| || |||| | ||| ||||||||||||||||||||||| |
|
|
| T |
4907946 |
gattttccttacaagggaagcttcctaactctaagccaaaaccagttgaagtcaacatgcttaatggtgagttaatttcttttatttttatagtaaacac |
4907847 |
T |
|
| Q |
559 |
tcaaattagtt |
569 |
Q |
| |
|
||||||||||| |
|
|
| T |
4907846 |
tcaaattagtt |
4907836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 276 - 489
Target Start/End: Original strand, 5822121 - 5822334
Alignment:
| Q |
276 |
atgatcacttaggttcaaaggatatggaatcactctcgtggnnnnnnnggctagaaatatgcattggagctgcaaaaggactacactatcttcacactgg |
375 |
Q |
| |
|
||||||| ||| |||||| | |||||||||||||||| ||| |||| ||||||||||| |||||||| || ||||||||||| ||||||||||| |
|
|
| T |
5822121 |
atgatcagttacgttcaaggaatatggaatcactctcatggaagaaaaggcttgaaatatgcatcggagctgctaagggactacactaccttcacactgg |
5822220 |
T |
|
| Q |
376 |
aacaaagcgtccgattttccaccgtgacgtaaagccagagaacattcttttggataacaatatggcaccaaaactctcgcaatttggatcatccgtacaa |
475 |
Q |
| |
|
||||||||| || |||| || ||||| |||| || | | ||||||||| ||||| ||||||| |||||||||||| || |||||| || ||||| |
|
|
| T |
5822221 |
aacaaagcgcacggtttttcattgtgacataaaacctcaaaccattcttttagataagaatatggtaccaaaactctcacatcttggattttctttacaa |
5822320 |
T |
|
| Q |
476 |
gggaagctttctaa |
489 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5822321 |
gggaagctttctaa |
5822334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 10 - 492
Target Start/End: Complemental strand, 4904468 - 4903992
Alignment:
| Q |
10 |
caataactttgatgaaaatcgaaaaattggagaagtaatgggcgatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagca |
109 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| || | | | |||||| |||||||| ||| ||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
4904468 |
caataactttgatgaaactcgaaaacttggacaatcactatacagtatagtgtacaaaggttatctcaaacataatggtgaaaatgagtatccagtagca |
4904369 |
T |
|
| Q |
110 |
ttgttgcggataacaaatacattcatggaacggcatttcaagaatgaaattgaactccattgccagctttatcacccaaatttgatatctttgataggat |
209 |
Q |
| |
|
||| | |||| ||| || ||| || || |||||||| | |||||||||||| |||| ||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
4904368 |
ttggagaggatgacacttagattgggcgattggatgttcaagaaggtaattgaactccacagccaacttcatcaccctaatttgatatctttaataggat |
4904269 |
T |
|
| Q |
210 |
tttgtgaccnnnnnnntgaggaaattctcgtgtataaaaatgatgaaatggtcaatggcactctccatgatcacttaggttcaaaggatatggaatcact |
309 |
Q |
| |
|
| || ||| |||| ||||| | |||||| || | ||| ||||||| ||||| ||||||||||| |||||| |||| | |||||||| |
|
|
| T |
4904268 |
tctgcgacgagaaagatgagaaaattatagtgtat------gagtacatgttcaatggttctctctatgatcacttatgttcaagggatctagaatcact |
4904175 |
T |
|
| Q |
310 |
ctcgtggnnnnnnnggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaaag |
409 |
Q |
| |
|
||| ||| |||| |||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||| | ||||| ||| |||| ||||| |
|
|
| T |
4904174 |
ctcatggaagaaaaggcttgaaatatgcattggagttgcaagaggactacactatcttcacaccggagcaaagcgcgcaatttttcactgtgatataaag |
4904075 |
T |
|
| Q |
410 |
ccagagaacattcttttggataacaatatggcaccaaaactctcgcaatttggatcatccgtacaagggaagctttctaaatc |
492 |
Q |
| |
|
|| | | |||||||| |||||||| |||| |||||||||| | ||| ||||| ||| | |||| ||||| ||||||||| |
|
|
| T |
4904074 |
cctcaaacaattcttttagataacaaaatggtaccaaaactcgcacaacttggaatttccttgcaagagaagcgttctaaatc |
4903992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 745 - 787
Target Start/End: Complemental strand, 20610853 - 20610811
Alignment:
| Q |
745 |
gtagtctagtgtctaaacttcaccttttttaaggtgaataagt |
787 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
20610853 |
gtagtctagtggctagaattcaccttttttaaggtgaataagt |
20610811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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