View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5870-Insertion-2 (Length: 929)
Name: NF5870-Insertion-2
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5870-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 9 - 907
Target Start/End: Complemental strand, 49766494 - 49765605
Alignment:
| Q |
9 |
aatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgttnnnnnnnnnnnnnnnnnta |
108 |
Q |
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| T |
49766494 |
aatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgttgaagaagaagaagaagata |
49766395 |
T |
|
| Q |
109 |
acagtcctaatagcaacaacacaggttcttttgaacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766394 |
acagtcctaatagcaacaacacaggttcttttgaacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttga |
49766295 |
T |
|
| Q |
209 |
aagaatttcaactgggtttggagattgtactctcagaagagttgaatctcaacgtgaaggtaaatcaaagggagtagttgctaattctaatggtattgct |
308 |
Q |
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| T |
49766294 |
aagaatttcaactgggtttggagattgtactctcagaagagttgaatctcaacgtgaaggtaaatcaaagggagtagttgctagttctaatggtattgct |
49766195 |
T |
|
| Q |
309 |
tctgtgaaccgtgctcaagaccaccaccaccatcaccatcattgcatgaaagagagagtacttagaaggtgtggaggaatattcagtggtttcatgatga |
408 |
Q |
| |
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| T |
49766194 |
tctgtgaaccgtgctcaagaccaccaccaccatcaccatcattgcatgaaagagagagtacttagaaggtgtggaggaatattcagtggtttcatgatga |
49766095 |
T |
|
| Q |
409 |
catcatcttcatcttcaaattcatctacttcatcttattgggtttcttctaattctgctgatgatgctgtaaatggaggaggaaaacaaggttctgttac |
508 |
Q |
| |
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| T |
49766094 |
catcatcttcatcttcaaattcatctacttcatcttattgggtttcttctaattctgctgatgatgctgtaaatggaggaggaaaacaaggttctgttac |
49765995 |
T |
|
| Q |
509 |
agtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatcttctaaagagaatcatcagaat |
608 |
Q |
| |
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| T |
49765994 |
agtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatcttctaaagagaatcatcagaat |
49765895 |
T |
|
| Q |
609 |
aatagaagagatattattagagatgctaatgataataataagaatgctacaccaaatttatctgctatgccatctttgctttctgctagaggatgattga |
708 |
Q |
| |
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| T |
49765894 |
aatagaagagatattattagagatgctaatgataataataagaatgctacaccaaatttatctgctatgccatctttgctttctgctagaggatgattga |
49765795 |
T |
|
| Q |
709 |
ttacagaacaaggttggtaaagaataaaggagatttaacatttggtttattatacacattaattagtgtcaagttaattaatttactactggtctattgt |
808 |
Q |
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| T |
49765794 |
ttacagaacaaggttggtaaagaataaaggagatttaacatttggtttattatacacattaattagtgtcaagttaattaa-ttactactggtc------ |
49765702 |
T |
|
| Q |
809 |
tattacttcaactactttgtttatcttatggg-ttgtcttaattaaatcat-actttctagtaactc-tcaa--gtctagctagctagctctatctttca |
903 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
49765701 |
-------tctactactttgtttatcttatgggtttgtcttaattaaatcataactttctagtaactcttcaaagttctagctagctagctctatctttca |
49765609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 14138362 - 14138488
Alignment:
| Q |
142 |
aacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttgaaagaatttcaactgggtttggagattgtactct |
241 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| | |
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| T |
14138362 |
aacgtaaggtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttgagaaaatctcaactgggtttggagattgtacctt |
14138461 |
T |
|
| Q |
242 |
cagaagagttgaatctcaacgtgaagg |
268 |
Q |
| |
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|||||||| ||||||||||||||||| |
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| T |
14138462 |
aagaagagtggaatctcaacgtgaagg |
14138488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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