View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5870_high_1 (Length: 345)
Name: NF5870_high_1
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5870_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 49765880 - 49766210
Alignment:
| Q |
13 |
aatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccacca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765880 |
aatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccacca |
49765979 |
T |
|
| Q |
113 |
cggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765980 |
cggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttg |
49766079 |
T |
|
| Q |
213 |
aagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766080 |
aagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttg |
49766179 |
T |
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| Q |
313 |
agcacggttcacagaagcaataccattagaa |
343 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49766180 |
agcacggttcacagaagcaataccattagaa |
49766210 |
T |
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