View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5870_high_2 (Length: 335)
Name: NF5870_high_2
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5870_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 49766494 - 49766189
Alignment:
| Q |
20 |
aatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgttnnnnnnnnnnnnnnnnnta |
119 |
Q |
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| T |
49766494 |
aatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgttgaagaagaagaagaagata |
49766395 |
T |
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| Q |
120 |
acagtcctaatagcaacaacacaggttcttttgaacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttga |
219 |
Q |
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| T |
49766394 |
acagtcctaatagcaacaacacaggttcttttgaacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttga |
49766295 |
T |
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| Q |
220 |
aagaatttcaactgggtttggagattgtactctcagaagagttgaatctcaacgtgaaggtaaatcaaagggagtagttgctaattctaatggtattgct |
319 |
Q |
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| T |
49766294 |
aagaatttcaactgggtttggagattgtactctcagaagagttgaatctcaacgtgaaggtaaatcaaagggagtagttgctagttctaatggtattgct |
49766195 |
T |
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| Q |
320 |
tctgtg |
325 |
Q |
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|||||| |
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| T |
49766194 |
tctgtg |
49766189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 279
Target Start/End: Original strand, 14138362 - 14138488
Alignment:
| Q |
153 |
aacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttgaaagaatttcaactgggtttggagattgtactct |
252 |
Q |
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| T |
14138362 |
aacgtaaggtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttgagaaaatctcaactgggtttggagattgtacctt |
14138461 |
T |
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| Q |
253 |
cagaagagttgaatctcaacgtgaagg |
279 |
Q |
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| T |
14138462 |
aagaagagtggaatctcaacgtgaagg |
14138488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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