View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5870_low_5 (Length: 244)
Name: NF5870_low_5
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5870_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15656579 - 15656342
Alignment:
| Q |
1 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagataccaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15656579 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagatatgaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
15656480 |
T |
|
| Q |
101 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaaggggtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15656479 |
gaaattgttgacttactgttggatacaaactcacaattacctgtaaaaagaagtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
15656380 |
T |
|
| Q |
201 |
gcaaaatgacatggcatctatatgataaaaccacacat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
15656379 |
gcaaaatgacatggcatctatatgataaaaccacacat |
15656342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15608883 - 15608648
Alignment:
| Q |
1 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagataccaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||| |||||| ||||||||||||||| |
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| T |
15608883 |
tgtgaaggagctattgaagatgcttgatgagaatgatataacattgcaagataagatcggaaacaccgctttttgctatgctgcggcagctggaaacatt |
15608784 |
T |
|
| Q |
101 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaaggggtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
200 |
Q |
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| T |
15608783 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaagggctggaaatggatatactcctattcagtatgcggctctgcaaggaagat |
15608684 |
T |
|
| Q |
201 |
gcaaaatgacatggcatctatatgataaaaccacac |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
15608683 |
ctaaaatgacatggcatctatatgataaaaccacac |
15608648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15647260 - 15647023
Alignment:
| Q |
1 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagataccaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
100 |
Q |
| |
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|||||||||| ||||||| |||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15647260 |
tgtgaaggagttattgaatatgcttgatgacaaagatttagcattgcaagatgtcaacggaaacactgctttttgctttgctgctgcagctggaaacatg |
15647161 |
T |
|
| Q |
101 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaaggggtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
200 |
Q |
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||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
15647160 |
gaaattgttgacttaatgttagataggaactcacagttacctgtaaaaaggggtggaaaaggatatactcctattcagtatgctgctctgcaaggaagat |
15647061 |
T |
|
| Q |
201 |
gcaaaatgacatggcatctatatgataaaaccacacat |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
15647060 |
gcaaaatgacatggcatctatatgataaaaccatacat |
15647023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15626934 - 15626697
Alignment:
| Q |
1 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagataccaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
100 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||| ||| | |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15626934 |
tgtgaaggagttattgagtattcttgatgacaatgacatagcgttgcaagatatgaaaggaaacactgctttttgctttgctgctgcagctggaaacatt |
15626835 |
T |
|
| Q |
101 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaaggggtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| |||||||||| | |
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| T |
15626834 |
gaaattgttgacttactgttggataggaactcacaattacctgtaataagggatggaaaaggatatactcctattcagtatgctgctttgcaaggaaggt |
15626735 |
T |
|
| Q |
201 |
gcaaaatgacatggcatctatatgataaaaccacacat |
238 |
Q |
| |
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| |||| |||||||||||||||||| ||||||| |||| |
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| T |
15626734 |
gtaaaacgacatggcatctatatgagaaaaccatacat |
15626697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15519739 - 15519502
Alignment:
| Q |
1 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagataccaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15519739 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagatatgaacggaaacactgctttttttattgctgctgcagctggaaacatg |
15519640 |
T |
|
| Q |
101 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaaggggtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
200 |
Q |
| |
|
|||||||||||||| || || | | ||| | | ||||| | | || ||||| ||| ||| | |||||||||||||||||||| |||||||||||| |
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| T |
15519639 |
aaaattgttgacttaatgctgaaaataaaccccaagttaccaattataaagggtgcaaaaggatgtgctcctattcagtatgctgctttgcaaggaagat |
15519540 |
T |
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| Q |
201 |
gcaaaatgacatggcatctatatgataaaaccacacat |
238 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||| |
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| T |
15519539 |
acaaaatgacatggcatctatatgatgaaaccatacat |
15519502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15495698 - 15495468
Alignment:
| Q |
1 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagataccaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| || ||||||||||| || |||||||||||| ||||||||| |
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| T |
15495698 |
tgtgaaggagctattgaagatgcttcatgacaatgatatagcattgcaagatgccaatggtaacactgctttctgtattgctgctgcagttggaaacatg |
15495599 |
T |
|
| Q |
101 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaaggggtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
200 |
Q |
| |
|
|||||||||||||| || || | || ||| | | |||||| | | ||| |||| | ||| |||||||||||||| ||||||| |||||||||||| |
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| T |
15495598 |
aaaattgttgacttaatgctgaaaagaaaccccgatttacctattataagaggtgcattaggatatactcctattcagaatgctgcattgcaaggaagat |
15495499 |
T |
|
| Q |
201 |
gcaaaatgacatggcatctatatgataaaac |
231 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
15495498 |
acaaaatggcatggcatctatatgataaaac |
15495468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 15536036 - 15535804
Alignment:
| Q |
1 |
tgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagataccaacggaaacactgctttttgctttgctgctgcagctggaaacatt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||| | |||||||||| |||||||| ||| |
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| T |
15536036 |
tgtgaaggagttattgaagatgcttgatgacaaagatatagaattgctagatatgaacggaaacactgctttctttattgctgctgctgctggaaatatt |
15535937 |
T |
|
| Q |
101 |
gaaattgttgacttactgttggataggaactcacaattacctgtaaaaaggggtggaaatggaaatactcctattcagtatgctgctctgcaaggaagat |
200 |
Q |
| |
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||||||||||||||| || || | | ||| | ||||| | | ||||||| | | ||| ||||||||||||||||||||||| |||||||||||| |
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| T |
15535936 |
gaaattgttgacttaatgctgaaaataaaccccattttaccaattataaggggtacagaaggatatactcctattcagtatgctgctttgcaaggaagat |
15535837 |
T |
|
| Q |
201 |
gcaaaatgacatggcatctatatgataaaacca |
233 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |
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|
| T |
15535836 |
acaaaatgacatggcatctttatgataaaacca |
15535804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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