View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5870_low_6 (Length: 239)
Name: NF5870_low_6
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5870_low_6 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 15656826 - 15656609
Alignment:
| Q |
18 |
gtaggtgagtttaatgttaaggcaatataattaattactctctttaactgcgattgaacctttgttttaggtgatgatccaaagaaaaggtttctcaacc |
117 |
Q |
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| T |
15656826 |
gtaggtgagtttaatgttaaggcaatataatta----ctctctttaactgcgattgaacctttgttttaggtgatgatccaaggaaaaggtttctcaacc |
15656731 |
T |
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| Q |
118 |
tttgtgttcccattcacaagcatgctctaaatggaaactggccggcagctaagcgcatcatagagaaagagaataagctcaaaaatgctgccataacaaa |
217 |
Q |
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| T |
15656730 |
tttgtgttcccattcacaagcatgctctaaatggaaactggccggcagctaagcgcatcatagagaaagagaataagctcaaaaatgctgccataacaaa |
15656631 |
T |
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| Q |
218 |
tgggtgtcctactctactgcat |
239 |
Q |
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||||| |||||||||||||||| |
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| T |
15656630 |
tgggtatcctactctactgcat |
15656609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 15519928 - 15519769
Alignment:
| Q |
80 |
tgttttaggtgatgatccaaagaaaaggtttctcaacctttgtgttcccattcacaagcatgctctaaatggaaactggccggcagctaagcgcatcata |
179 |
Q |
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|||||||||||||||| |||| ||| |||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |
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| T |
15519928 |
tgttttaggtgatgatgcaaataaagggtttctcaagcattgtgttcccattcacaagcatgctctgaatggaaactggccagcagctaagcgcattata |
15519829 |
T |
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| Q |
180 |
gagaaagagaataagctcaaaaatgctgccataacaaatgggtgtcctactctactgcat |
239 |
Q |
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| T |
15519828 |
gacaaagagaataagctaaaaaatgctgccataacaaatgggtatcctactctactgcat |
15519769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 239
Target Start/End: Complemental strand, 15495917 - 15495728
Alignment:
| Q |
50 |
aattactctctttaactgcgattgaacctttgttttaggtgatgatccaaagaaaaggtttctcaacctttgtgttcccattcacaagcatgctctaaat |
149 |
Q |
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| T |
15495917 |
aattattctctttaactgcaattgaacctttgttttaggcgatgatccaaacaaaaggtttctcaagttttgtgttcccattcacaagcatgctctaaac |
15495818 |
T |
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| Q |
150 |
ggaaactggccggcagctaagcgcatcatagagaaagagaataagctcaaaaatgctgccataacaaatgggtgtcctactctactgcat |
239 |
Q |
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| T |
15495817 |
ggaaactggcctgcagccaaacgcatcttagacaaacagaatgagcttaaaaatgctgccatagcaaatgggtggcatacactactgcat |
15495728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 15647459 - 15647290
Alignment:
| Q |
70 |
attgaacctttgttttaggtgatgatccaaagaaaaggtttctcaacctttgtgttcccattcacaagcatgctctaaatggaaactggccggcagctaa |
169 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||| |
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| T |
15647459 |
attgaacctttgttttaggtgatgatcaaaagaaaaagtttctcaacctttgcgttcccattcacaagcatgctctaaacggaaattggctagcagctaa |
15647360 |
T |
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| Q |
170 |
gcgcatcatagagaaagagaataagctcaaaaatgctgccataacaaatgggtgtcctactctactgcat |
239 |
Q |
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| T |
15647359 |
ccgcatcttagacaaagagaagaagctcaaaaatgctgccataacaaatgggtggcctacactattgcat |
15647290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 15536256 - 15536066
Alignment:
| Q |
53 |
tactctctttaactgcgattgaacctttgttttaggtgatgatccaaagaaaaggtttctcaacctttgtgttcccattcacaagcatgctctaaatgga |
152 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||| ||| |
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| T |
15536256 |
tactctctttaactgcaattgaacctttgttttaggtgatgatcaaaggaaaaggtttctcaagcattgtgttcccattcacaagcatgctctaaacgga |
15536157 |
T |
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| Q |
153 |
aactggccggcagctaagcgcatcatag----agaaagagaataagctcaaaaatgctgccataacaaatgggtgtcctactctactgcat |
239 |
Q |
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|||||||| ||||| |||| |||| ||| | | |||||||||||||||||||||||||||| || ||||| |||||||||| ||||| |
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| T |
15536156 |
aactggcctgcagccaagcacatcttagacatatatagagaataagctcaaaaatgctgccatagcatttgggtctcctactctattgcat |
15536066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 15627123 - 15626964
Alignment:
| Q |
80 |
tgttttaggtgatgatccaaagaaaaggtttctcaacctttgtgttcccattcacaagcatgctctaaatggaaactggccggcagctaagcgcatcata |
179 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| || |
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| T |
15627123 |
tgttttaggtaatgatccaaggaaaaggtttctcaagctttgtgttcccattcacaaacatgctctaaatggaaactggccagcagccaagcgcatctta |
15627024 |
T |
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| Q |
180 |
gagaaagagaataagctcaaaaatgctgccataacaaatgggtgtcctactctactgcat |
239 |
Q |
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| T |
15627023 |
gacgaagacgataagctgaaaaatgctgccatagcaaatgggtgtccaacactattgcat |
15626964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 15609126 - 15608913
Alignment:
| Q |
18 |
gtaggtgagtttaatgttaaggcaatataatta-attactctctttaactgcgattgaacctttgttttaggtgatgatccaaagaaaaggtttctcaac |
116 |
Q |
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||||||||||||||| ||| ||||||| ||||| |||||||||||||||| | ||||||||||||||||||| ||||| || ||||||||| |
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| T |
15609126 |
gtaggtgagtttaatattatggcaatagaattatattactctctttaacttcaattgaacctttgttttaggaaatgat---------agctttctcaac |
15609036 |
T |
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| Q |
117 |
ctttgtgttcccattcacaagcatgctctaaatggaaactggccggcagctaagcgcatcatagagaaagagaataagctcaaaaatgctgccataacaa |
216 |
Q |
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||||||||||| ||| |||||||||||||| |||||||||||| ||||| || | |||| |||| || ||||| | ||||||||||||||||||||||| |
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| T |
15609035 |
ctttgtgttccaatttacaagcatgctctacatggaaactggcgagcagccaaacacatcttagacaacgagaacaggctcaaaaatgctgccataacaa |
15608936 |
T |
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| Q |
217 |
atgggtgtcctactctactgcat |
239 |
Q |
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|||||| |||||||||||||||| |
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| T |
15608935 |
atgggtatcctactctactgcat |
15608913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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