View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871-Insertion-1 (Length: 978)
Name: NF5871-Insertion-1
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871-Insertion-1 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 504 - 972
Target Start/End: Complemental strand, 31320739 - 31320267
Alignment:
| Q |
504 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctactaatgtttttgttctt---taa |
600 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||| ||||| ||| |
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| T |
31320739 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
31320640 |
T |
|
| Q |
601 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
700 |
Q |
| |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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| T |
31320639 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
31320540 |
T |
|
| Q |
701 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
800 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
31320539 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
31320440 |
T |
|
| Q |
801 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataa-cacatgaaccacaataatgatt |
899 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
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| T |
31320439 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
31320340 |
T |
|
| Q |
900 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattt |
972 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320339 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattt |
31320267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 504 - 972
Target Start/End: Complemental strand, 31332992 - 31332520
Alignment:
| Q |
504 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctactaatgtttttgttctt---taa |
600 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||| ||||| ||| |
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| T |
31332992 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
31332893 |
T |
|
| Q |
601 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
700 |
Q |
| |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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| T |
31332892 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
31332793 |
T |
|
| Q |
701 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
800 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
31332792 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
31332693 |
T |
|
| Q |
801 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataa-cacatgaaccacaataatgatt |
899 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
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| T |
31332692 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
31332593 |
T |
|
| Q |
900 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattt |
972 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31332592 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattt |
31332520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 31321378 - 31321282
Alignment:
| Q |
9 |
ctagtaatggtgtctcaattattgctcttgtatctgatattgaatgatcatttaatgatgaagatactttgtggacagatgtgattatacctccctc |
105 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||||||| ||||||| ||||||| | |||| | |||||||| |||||||| |||||||| |
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| T |
31321378 |
ctagtaacggtgtttcaattattgctcttgtatccgatattgaatcatcatttgatgatgagggtactctatggacagacgtgattattcctccctc |
31321282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 31333631 - 31333535
Alignment:
| Q |
9 |
ctagtaatggtgtctcaattattgctcttgtatctgatattgaatgatcatttaatgatgaagatactttgtggacagatgtgattatacctccctc |
105 |
Q |
| |
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||||||| ||||| |||||||||||||||||||| |||||||||| ||||||| ||||||| | |||| | |||||||| |||||||| |||||||| |
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| T |
31333631 |
ctagtaacggtgtttcaattattgctcttgtatccgatattgaatcatcatttgatgatgagggtactctatggacagacgtgattattcctccctc |
31333535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 504 - 972
Target Start/End: Original strand, 2931 - 3403
Alignment:
| Q |
504 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctactaatgtttttgttctt---taa |
600 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||| ||||| ||| |
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| T |
2931 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
3030 |
T |
|
| Q |
601 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
700 |
Q |
| |
|
||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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|
| T |
3031 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
3130 |
T |
|
| Q |
701 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
800 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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|
| T |
3131 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
3230 |
T |
|
| Q |
801 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataa-cacatgaaccacaataatgatt |
899 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3231 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
3330 |
T |
|
| Q |
900 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattt |
972 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3331 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattt |
3403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 2293 - 2389
Alignment:
| Q |
9 |
ctagtaatggtgtctcaattattgctcttgtatctgatattgaatgatcatttaatgatgaagatactttgtggacagatgtgattatacctccctc |
105 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||||||| ||||||| ||||||| | |||| | |||||||| |||||||| |||||||| |
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|
| T |
2293 |
ctagtaacggtgtttcaattattgctcttgtatccgatattgaatcatcatttgatgatgagggtactctatggacagacgtgattattcctccctc |
2389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 24154767 - 24154725
Alignment:
| Q |
270 |
ttaggagaagattaacaaactatctaaaatcttaacaaactaa |
312 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
24154767 |
ttaggagaagattaacaaactaactaaaatcttaactaactaa |
24154725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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