View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871-Insertion-10 (Length: 408)
Name: NF5871-Insertion-10
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871-Insertion-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 26608775 - 26609162
Alignment:
| Q |
9 |
gttcttctatcatcggttgttattctaacaagatattttataaattcatttttaagtcttatatctcattcaatttaagacttttaacatatacttctca |
108 |
Q |
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| T |
26608775 |
gttcttctatcatcggttgttattctaacaagatatcttataaaattatttttaagtcttat--ctcattcaatttaagacttttaacatatacttctca |
26608872 |
T |
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| Q |
109 |
cgtttaggacctgacatttggatcttgattaacctaattacatgtctaactcattaaatccaaatcgactaatagaatcacgaatgtctctcatttataa |
208 |
Q |
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| T |
26608873 |
cgt---------gacatctggatcttgattaacctaattacatgtctaactcattaataccaaatcgattaatagaatcacgaatgtctctcatttataa |
26608963 |
T |
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| Q |
209 |
actcattttccagttttatctcctcttaatttggtgacatttagaagnnnnnnnnnnnacctaaagagggaatatgactacattcataacctgatcttaa |
308 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
26608964 |
actcattttccagttttatctcctcttaacttggtgacatttagaagtttttttttt-acctaaagaggaaatatgactacattcataagctgatcttaa |
26609062 |
T |
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| Q |
309 |
tatttagacaaacacttgttttattataaccatgattttaaacaaagcttccctatcgtgaccataaactaaggttctgaatatctataatagttttaga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609063 |
tatttagacaaacacttgttttattataaccatgattttaaacaaagcttccctatcgtgaccataaactaaggttctgaatatctataatagttttaga |
26609162 |
T |
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