View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871-Insertion-11 (Length: 271)
Name: NF5871-Insertion-11
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871-Insertion-11 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 121 - 271
Target Start/End: Original strand, 13079408 - 13079558
Alignment:
| Q |
121 |
ctctgttgtatcaccttgtgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttcc |
220 |
Q |
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| T |
13079408 |
ctctgttgtatcaccttgtgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttcc |
13079507 |
T |
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| Q |
221 |
tttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctca |
271 |
Q |
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| T |
13079508 |
tttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctca |
13079558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 124 - 271
Target Start/End: Original strand, 13075207 - 13075351
Alignment:
| Q |
124 |
tgttgtatcaccttgtgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttccttt |
223 |
Q |
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| T |
13075207 |
tgttgtatcaccttatgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttccttt |
13075306 |
T |
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| Q |
224 |
gttatgtttttcttgaaaccttcatctacttcattttgtatcttctca |
271 |
Q |
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| T |
13075307 |
gttatgtttttcttgaaaccttcatcta---tattttgtatcttctca |
13075351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 13079296 - 13079349
Alignment:
| Q |
9 |
taatcttcattgcaatcttaggttcttcactttctcccttcacaaatggtacaa |
62 |
Q |
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| T |
13079296 |
taatcttcattgcactcttaggttcttcactttctcccttcacaaatggtacaa |
13079349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 13075092 - 13075145
Alignment:
| Q |
9 |
taatcttcattgcaatcttaggttcttcactttctcccttcacaaatggtacaa |
62 |
Q |
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| T |
13075092 |
taatcttcattgaaatcttaggttcttaaatttctcccttcacaaatggtacaa |
13075145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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