View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871-Insertion-2 (Length: 930)

Name: NF5871-Insertion-2
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871-Insertion-2
NF5871-Insertion-2
[»] chr3 (6 HSPs)
chr3 (49-425)||(9130671-9131047)
chr3 (524-930)||(9123100-9123505)
chr3 (524-930)||(9131207-9131612)
chr3 (49-425)||(9122575-9122940)
chr3 (424-474)||(9123039-9123089)
chr3 (424-474)||(9131146-9131196)
[»] chr4 (3 HSPs)
chr4 (51-409)||(24524526-24524885)
chr4 (557-930)||(24524997-24525373)
chr4 (462-512)||(24524921-24524967)
[»] chr5 (3 HSPs)
chr5 (660-797)||(9038960-9039096)
chr5 (677-718)||(39815109-39815150)
chr5 (898-930)||(39814989-39815021)
[»] chr7 (2 HSPs)
chr7 (210-372)||(10323138-10323301)
chr7 (117-164)||(10323079-10323126)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 49 - 425
Target Start/End: Original strand, 9130671 - 9131047
Alignment:
Q  49 gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130671 gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 9130770  T
Q  149 ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga 248  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  9130771 ctgcagctagactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaaga 9130870  T
Q  249 taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 348  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130871 taacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 9130970  T
Q  349 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130971 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 9131047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 524 - 930
Target Start/End: Original strand, 9123100 - 9123505
Alignment:
Q  524 agacgttggcagtgataaataaaccagacaagtaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatg 623  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9123100 agacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataaattcttacatg 9123199  T
Q  624 acagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaat 723  Q
    | ||||||||||| | ||| || ||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  9123200 a-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataatttctccttcttcccaat 9123297  T
Q  724 ctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca 823  Q
    ||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9123298 ctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca 9123397  T
Q  824 atcttgcaatgaatgaccacacagattctccagctcgttataagac-acaaattatcatcaataaacgccgttctttttatgctttgtatcatcaattta 922  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9123398 atcttgcaatgaatgaccgcacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaattta 9123497  T
Q  923 gcagcttc 930  Q
    ||||||||    
T  9123498 gcagcttc 9123505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 524 - 930
Target Start/End: Original strand, 9131207 - 9131612
Alignment:
Q  524 agacgttggcagtgataaataaaccagacaagtaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatg 623  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9131207 agacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataaattcttacatg 9131306  T
Q  624 acagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaat 723  Q
    | ||||||||||| | ||| || ||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  9131307 a-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataatttctccttcttcccaat 9131404  T
Q  724 ctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca 823  Q
    ||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9131405 ctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca 9131504  T
Q  824 atcttgcaatgaatgaccacacagattctccagctcgttataagac-acaaattatcatcaataaacgccgttctttttatgctttgtatcatcaattta 922  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9131505 atcttgcaatgaatgaccgcacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaattta 9131604  T
Q  923 gcagcttc 930  Q
    ||||||||    
T  9131605 gcagcttc 9131612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 49 - 425
Target Start/End: Original strand, 9122575 - 9122940
Alignment:
Q  49 gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122575 gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 9122674  T
Q  149 ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga 248  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9122675 ctgcagctcgactcctcttcaatcattctcccggatctcaactccattcatagaataaccaagggctcccctttaaacggctaagactccatttcaaaga 9122774  T
Q  249 taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 348  Q
    ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122775 taacactttgatctcatc-----------gacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 9122863  T
Q  349 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122864 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 9122940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 9123039 - 9123089
Alignment:
Q  424 aaacatcaaataaagacattggcagtaatatctacaagagtaactgataat 474  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  9123039 aaacatcaaataaagacattggcagtaataactataagagtaactgataat 9123089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 9131146 - 9131196
Alignment:
Q  424 aaacatcaaataaagacattggcagtaatatctacaagagtaactgataat 474  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  9131146 aaacatcaaataaagacattggcagtaataactataagagtaactgataat 9131196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 51 - 409
Target Start/End: Original strand, 24524526 - 24524885
Alignment:
Q  51 agcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaacca-gaaaaaagacatccagacggaccactgatctgc 149  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24524526 agcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccaagaaaaaagacatccagacggaccactgatctgc 24524625  T
Q  150 tgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaagat 249  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  24524626 tgcagctggactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaagat 24524725  T
Q  250 aacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc 349  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24524726 aacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc 24524825  T
Q  350 atattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaa 409  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24524826 atattaaccaataacccctctttgatatcagcaatgaacctttctagttgcaaaaacaaa 24524885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 557 - 930
Target Start/End: Original strand, 24524997 - 24525373
Alignment:
Q  557 aattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatgacagttccttcctat---aatacatgcattaca 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||  |    
T  24524997 aattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatga-agttccttcctatgataatacatgcattgta 24525095  T
Q  654 atcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaat 753  Q
    || |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||    
T  24525096 attagctacaatcattcctaaagataaaaagctaattaatcgagaatgataatttctccatcttcccaatctctgttaagaaacttctcctcattcaaat 24525195  T
Q  754 ctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacagattctc 853  Q
    |  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24525196 cattcactcccataatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattctc 24525295  T
Q  854 cagctcgttataagac-acaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagcttc 930  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24525296 cagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagcttc 24525373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 24524921 - 24524967
Alignment:
Q  462 agtaactgataattgaccatctatatagtatgagttgcagtgacttgatat 512  Q
    ||||||||||||||||||||||||    |||||||||||||||||| ||||    
T  24524921 agtaactgataattgaccatctat----tatgagttgcagtgacttcatat 24524967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 660 - 797
Target Start/End: Complemental strand, 9039096 - 9038960
Alignment:
Q  660 tgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaa 759  Q
    |||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |    
T  9039096 tgcagtcattcctaaagataaaaaactaattaatcgagaatgataatttctccttcttcccaat-tctgttaagaaatttctcctcgttcaaatctgtca 9038998  T
Q  760 ctcccattatctcatcctttagaaccaaccctacaaat 797  Q
    ||||||| ||||||||||||| ||||||||| ||||||    
T  9038997 ctcccataatctcatcctttaaaaccaaccccacaaat 9038960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 677 - 718
Target Start/End: Complemental strand, 39815150 - 39815109
Alignment:
Q  677 ataaaaagctaattaatcgagaatgataatttctccttcttc 718  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  39815150 ataaaaagctaattaatcgagaatgataacttctccttcttc 39815109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 898 - 930
Target Start/End: Complemental strand, 39815021 - 39814989
Alignment:
Q  898 ttttatgctttgtatcatcaatttagcagcttc 930  Q
    |||||||||||||||||||||||||||||||||    
T  39815021 ttttatgctttgtatcatcaatttagcagcttc 39814989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 210 - 372
Target Start/End: Original strand, 10323138 - 10323301
Alignment:
Q  210 agggctcccctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttt 309  Q
    |||||||||||||||| ||| |||||| |||| | | || ||||  ||||| |||||||||||||||| |||||||||||||||||| |||| ||| |||    
T  10323138 agggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttgatgattttt 10323237  T
Q  310 t-cattcctagccttccaaagaacccaaataacggagtgccatattaaccaataacccctcttt 372  Q
      |||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  10323238 cgcatttctagccttccaaagaaccaaaataacggagtgccaaattaaccaataacccctcttt 10323301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 10323079 - 10323126
Alignment:
Q  117 gaaaaaagacatccagacggaccactgatctgctgcagctggactcct 164  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||||    
T  10323079 gaaaaatgacatccagacggaccacttatctgcttcagctggactcct 10323126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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