View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871-Insertion-3 (Length: 805)
Name: NF5871-Insertion-3
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 9 - 805
Target Start/End: Complemental strand, 4300820 - 4300020
Alignment:
| Q |
9 |
gttatgttagcttttcatggttttttcatgttacttgccaataaatctcttccttcattgacaagttttcaatttgctaataaaataactacatagttat |
108 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4300820 |
gttatgttagctgttcatggttttttcatgttacttgccaataaatctctcccttcattgacaagttttcaatttactaataaaataactacatagttat |
4300721 |
T |
|
| Q |
109 |
gattgtcccatgaaatgcatttgcttgttcctatttttacttgannnnnnnnnnnnn-----atggataattttttagattaaggcatggtttctaggnn |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4300720 |
gattgtcccatgaaatgcatttgcttgttcctatttttacttgattttttttttttttttttatggataattttttagattaaggcatggtttctaggtt |
4300621 |
T |
|
| Q |
204 |
nnnnncaaccatcccataacatggtggcttatgtcccatcccataatccccaattagttcaaatatcttacagaagttccgtccttcactccattaaagg |
303 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4300620 |
tttttcaaccatcccataacatgatggcttatgtcccattccataatccccaattagttcaaatatcttacagaagttccatccttcactccattaaagg |
4300521 |
T |
|
| Q |
304 |
aaatatcattgtcgtaaaataatgtggcaacttgtaggtttgcacccttnnnnnnnttcgttctcaaaatgatgcttagagttgtttgagagtgcttatg |
403 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
4300520 |
aaatataattgtcgtaaaataatgtggcaacttgtaggtttgcacccttaaaaaaattcattctcaaaatgatgcttagagttgttcgagagtgcttatg |
4300421 |
T |
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| Q |
404 |
tctcttttgggtcgataaaatgcgcatgataacatgttagaatcaatagccaaagaatgtgaggatgaaggaaaacgacgagagaaaattgagaggtttc |
503 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4300420 |
tctcttttgggtcgataaaatgctcatgataacatgttagaatcaatagccaaagaatgtgaggatgaaggaaaacgactagagaaaattgagaggtttc |
4300321 |
T |
|
| Q |
504 |
tattgtttgaaaaagtgaaacgaacttcttgatgcaattcaaagtacagatgggaatttataatgagttgcagtctgctagaaacagatgcaatgatgac |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4300320 |
tattgtttgaaaaagtgaaacgaacttcttgatgcaattcaaagtacagatgggaatttataatgagttgcagtctgctagaaacagatgcaatgatgac |
4300221 |
T |
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| Q |
604 |
agtgtgctacaaccttttattaactgaatcaaccactttagcatagcacataatccacttccatttttcacgacttgaacgctgttttgctcgtctgaag |
703 |
Q |
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| T |
4300220 |
agtgtgctacaaccttttattaactggatcaaccactttagcat--cacataatccacttccattttccacgacttgaacgctattttgctcgtctaaag |
4300123 |
T |
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| Q |
704 |
catttatcgaagaagatgaattatcaagcatgtcaacgttggtctcaccataccgattatcacaatgcaactccctcttgtcttgctcaa-gtgcttctg |
802 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||| |||||||||||||||||| || ||||||||| |
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| T |
4300122 |
gatttatcgaagaagatgaattatcaagcatgttaacgctggtcccagcataccgattatcacaatgccactccctcttgtcttgcttaaggtgcttctg |
4300023 |
T |
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| Q |
803 |
ttt |
805 |
Q |
| |
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||| |
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| T |
4300022 |
ttt |
4300020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 688 - 794
Target Start/End: Complemental strand, 51483024 - 51482918
Alignment:
| Q |
688 |
ttttgctcgtctgaagcatttatcgaagaagatgaattatcaagcatgtcaacgttggtctcaccataccgattatcacaatgcaactccctcttgtctt |
787 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| | |||||||||||||| |
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| T |
51483024 |
ttttgctcgtctgaaacatttatggaagaagatgaattatcaaacatgtcaacgttggtctctccatcttgattatcaccatgtagctccctcttgtctt |
51482925 |
T |
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| Q |
788 |
gctcaag |
794 |
Q |
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||||||| |
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| T |
51482924 |
gctcaag |
51482918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 650 - 794
Target Start/End: Original strand, 30204256 - 30204400
Alignment:
| Q |
650 |
cacataatccacttccatttttcacgacttgaacgctgttttgctcgtctgaagcatttatcgaagaagatgaattatcaagcatgtcaacgttggtctc |
749 |
Q |
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||||||||||||||||||||| ||| | | |||| || |||||||||| ||||||||||| |||||||||| |||||| |||||||||| | ||| ||| |
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| T |
30204256 |
cacataatccacttccattttccacaaatcgaacactattttgctcgtacgaagcatttatggaagaagatgtattatcgagcatgtcaatgctgggctc |
30204355 |
T |
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| Q |
750 |
accataccgattatcacaatgcaactccctcttgtcttgctcaag |
794 |
Q |
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| T |
30204356 |
tccatcccgattatcaccaattagctccctcttgtcttgctcaag |
30204400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 666 - 794
Target Start/End: Complemental strand, 51499883 - 51499758
Alignment:
| Q |
666 |
atttttcacgacttgaacgctgttttgctcgtctgaagcatttatcgaagaagatgaattatcaagcatgtcaacgttggtctcaccataccgattatca |
765 |
Q |
| |
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| T |
51499883 |
attttccatgactggaacgcaatttttctcgtctgaagcatttatggaaga---tgaattatcaagcttgttaacagtggtctctccatcctgattatca |
51499787 |
T |
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| Q |
766 |
caatgcaactccctcttgtcttgctcaag |
794 |
Q |
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| T |
51499786 |
ccatgtagctccctcttgtcttgctcaag |
51499758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 625 - 794
Target Start/End: Original strand, 20866892 - 20867059
Alignment:
| Q |
625 |
aactgaatcaaccactttagcatagcacataatccacttccatttttcacgacttgaacgctgttttgctcgtctgaagcatttatcgaagaagatgaat |
724 |
Q |
| |
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||||||||||||||| || |||| |||| |||||||||||||||| |||||| | |||||| |||| ||| ||||||||| ||| |||||||| || |
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| T |
20866892 |
aactgaatcaaccaccttcgcat--cacacaatccacttccattttccacgacatcaacgctatttttctcatctgaagcaattacggaagaagaccgat |
20866989 |
T |
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| Q |
725 |
tatcaagcatgtcaacgttggtctcaccataccgattatcacaatgcaactccctcttgtcttgctcaag |
794 |
Q |
| |
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| T |
20866990 |
tatcaagcctgtcaacattggtctctccatcttgattatcaccatgtagctccctcttgtcttgctcaag |
20867059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 693 - 794
Target Start/End: Complemental strand, 36549930 - 36549829
Alignment:
| Q |
693 |
ctcgtctgaagcatttatcgaagaagatgaattatcaagcatgtcaacgttggtctcaccataccgattatcacaatgcaactccctcttgtcttgctca |
792 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||| |||| | ||||||||| ||| | | ||||||| ||||||||| |
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| T |
36549930 |
ctcgtctgaagcatttatggaagaacatgaattatcaagcatgttaacagtggtctctccatcctgattatcaccatgtagcaccctcttatcttgctca |
36549831 |
T |
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| Q |
793 |
ag |
794 |
Q |
| |
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|| |
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| T |
36549830 |
ag |
36549829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 625 - 794
Target Start/End: Original strand, 135636 - 135806
Alignment:
| Q |
625 |
aactgaatcaaccactttagcatagcacataatccacttccatttttcacgacttgaacgctgttttgctcgtctgaagcatttatcgaagaagatgaat |
724 |
Q |
| |
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||||||||||||||| || |||| |||||||||||||| |||||| || |||| |||| || |||||||| ||||||||| | || | |||||| || |
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| T |
135636 |
aactgaatcaaccaccttcgcat--cacataatccactttcattttccatgactcgaacactattttgctcatctgaagcagtcatgggagaagacagat |
135733 |
T |
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| Q |
725 |
tatcaagcatgtcaacgttggtctcaccataccgattatca-caat--gcaactccctcttgtcttgctcaag |
794 |
Q |
| |
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|||||||| |||||| |||||||| |||| | |||||||| |||| | | ||||||||||||||||||||| |
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| T |
135734 |
tatcaagcccgtcaacattggtctctccatcctgattatcaccaattagtagctccctcttgtcttgctcaag |
135806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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