View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871-Insertion-4 (Length: 739)

Name: NF5871-Insertion-4
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871-Insertion-4
NF5871-Insertion-4
[»] chr5 (6 HSPs)
chr5 (201-730)||(14274694-14275222)
chr5 (8-201)||(14275302-14275495)
chr5 (13-142)||(37803007-37803136)
chr5 (10-140)||(37626469-37626599)
chr5 (571-670)||(39173529-39173628)
chr5 (551-605)||(10813151-10813205)
[»] chr3 (6 HSPs)
chr3 (203-681)||(51140100-51140576)
chr3 (524-682)||(40927306-40927464)
chr3 (35-127)||(5187238-5187330)
chr3 (558-605)||(52964156-52964203)
chr3 (558-605)||(54548333-54548380)
chr3 (564-605)||(38475645-38475686)
[»] chr6 (2 HSPs)
chr6 (206-670)||(21729772-21730231)
chr6 (401-670)||(14453346-14453611)
[»] chr4 (4 HSPs)
chr4 (8-201)||(11991118-11991310)
chr4 (552-605)||(5185486-5185539)
chr4 (548-605)||(38761390-38761447)
chr4 (526-605)||(54421415-54421494)
[»] chr1 (8 HSPs)
chr1 (207-505)||(14648297-14648593)
chr1 (521-670)||(14650984-14651130)
chr1 (521-670)||(14660775-14660921)
chr1 (13-142)||(41313007-41313136)
chr1 (45-137)||(25218316-25218409)
chr1 (558-605)||(28037673-28037720)
chr1 (551-605)||(33978188-33978242)
chr1 (551-604)||(27643376-27643429)
[»] chr2 (4 HSPs)
chr2 (403-668)||(8323479-8323741)
chr2 (13-142)||(19216444-19216572)
chr2 (551-608)||(4244400-4244457)
chr2 (525-605)||(36756962-36757042)
[»] scaffold2006 (1 HSPs)
scaffold2006 (13-142)||(810-939)
[»] chr7 (5 HSPs)
chr7 (13-112)||(2188797-2188897)
chr7 (13-111)||(19632010-19632109)
chr7 (46-137)||(2582790-2582883)
chr7 (54-137)||(10296076-10296160)
chr7 (524-603)||(513846-513925)
[»] chr8 (3 HSPs)
chr8 (13-112)||(29823566-29823666)
chr8 (524-604)||(11629494-11629574)
chr8 (551-604)||(16484161-16484214)
[»] scaffold0996 (1 HSPs)
scaffold0996 (524-605)||(1554-1635)


Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 201 - 730
Target Start/End: Complemental strand, 14275222 - 14274694
Alignment:
Q  201 atcagctggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  14275222 atcagctggtgtgatcaaatgtaatgtagacaccataatattccacaataacacattaggatatggaatgtgcttctggaactctgtgggccacttcttg 14275123  T
Q  301 atggggaaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttctt-gaagcaatcaacatggctattttacgatcggtt 399  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| || ||||| ||||||||||    
T  14275122 atgggaaaatctgcccacctacacacctatatatttgtcctagaagcataagctatcacatttttttgaagcaatcaacacggttatttcacgatcggtt 14275023  T
Q  400 tccacaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtg 499  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||| |||||||||||||||    
T  14275022 tccacaatgttatgtttgaaaaggacaacaagtcgcttgcagaagccataagctcttcttcaacaatccacaatgagctcgggggcctgatagctcagtg 14274923  T
Q  500 taggggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcat 599  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  14274922 taggggtctcttggcaaccaatttcgactttgtagtgtcgttcattcgaaagcaagcaaatagagttgcacataggatagttagagcatccttatctcat 14274823  T
Q  600 cctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaattttggttttactcnnnnnnnntatttaata 699  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||        |||||||||    
T  14274822 cctagttctcatatctattatattgtaccacatgatttgtactctataattattaatgaaatgtattaattttaattttactc--aaaaaatatttaata 14274725  T
Q  700 gaaaagtattaagtatgatatgcacagggct 730  Q
    ||||||||| ||| ||||||||  |||||||    
T  14274724 gaaaagtatcaaggatgatatgtgcagggct 14274694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 14275495 - 14275302
Alignment:
Q  8 acttaggtagtaaaagaccgaaagccttgttcttaggaattttatatttgatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatt 107  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||    
T  14275495 acttgggtagtaaaaggctgaaagccttgttcttaggaattttatatttgatgtaaaacaactctgatttactattttgaaaatttaagagaaacctgtt 14275396  T
Q  108 tattcgtgtattttgaagtctatgagttttcagtttctcctattatttataagnnnnnnnntaattattcatctttttcactaagaaatgtata 201  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||         || |||||||||||||||||||||||| ||||    
T  14275395 tattcgtgtattttgaagcctatgagttttcagtttctcctattatttataagaagaaaaaaaaatattcatctttttcactaagaaatatata 14275302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 37803136 - 37803007
Alignment:
Q  13 ggtagtaaaagaccgaaagccttgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatttatt 111  Q
    |||||| |||| | |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||    
T  37803136 ggtagtgaaaggcggaaagccttgttgttaggaattttatattttgatgtaaaacaactctaatttactattctgaaaattcaagagaaacttatttatt 37803037  T
Q  112 cgtgtattttgaagtctatgagttttcagtt 142  Q
    |   | |||||||||| ||||||||||||||    
T  37803036 c-aattttttgaagtcaatgagttttcagtt 37803007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 37626599 - 37626469
Alignment:
Q  10 ttaggtagtaaaagaccgaaagccttgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatttaagagaaacctattt 108  Q
    ||||||||| |||| | |||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| |||||||| ||||||||| |||||    
T  37626599 ttaggtagtgaaaggcggaaagccttgttgttaggaattttatattttgatgtaaaacaactctgatttactattctgaaaattcaagagaaacttattt 37626500  T
Q  109 attcgtgtattttgaagtctatgagttttcag 140  Q
    ||||   | |||||||||| ||||||||||||    
T  37626499 attc-aattttttgaagtcaatgagttttcag 37626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 571 - 670
Target Start/End: Complemental strand, 39173628 - 39173529
Alignment:
Q  571 ataggatagctagagcatccttatctcatcctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaatt 670  Q
    |||| ||||||| ||||||||||||||||||||||  || ||||| ||||||| | ||||||||| |||||||||||||||||||||||||| |||||||    
T  39173628 atagcatagctaaagcatccttatctcatcctagccttcatatcttttatattgttccacatgatgtgtactctataattattaatgaaatgcattaatt 39173529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 605
Target Start/End: Complemental strand, 10813205 - 10813151
Alignment:
Q  551 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    |||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  10813205 gcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagc 10813151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 203 - 681
Target Start/End: Complemental strand, 51140576 - 51140100
Alignment:
Q  203 cagctggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttgat 302  Q
    ||||||||||||||||||||||||||||| |   |||||||||||| ||||   | |||||  ||||||| ||| | |||| ||||||||||||||||||    
T  51140576 cagctggtgtgatcaaatgtaatgtagacgctgcaatattccacaacaacacgataggatacagaatgtgtttccgaaactctgtgggccacttcttgat 51140477  T
Q  303 ggggaaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttcc 402  Q
    |||||||||||||||||| ||| |||   ||||||||||||||||||||||| |  |||| |||| ||||||||||| ||| |||| ||  | |||| ||    
T  51140476 ggggaaatctgcccaccttcactcctcagtatttgtcctagaagcagaagctcttgcattgcttgcagcaatcaacacggccatttcac--ttggttacc 51140379  T
Q  403 acaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtag 502  Q
    |||||||||| |||||||  |||| ||||| ||||||||| |||||||  || |||||| || |||||| |||||||||||||||| ||| |||||||||    
T  51140378 acaatgttatgtttgaaactgacagcaagttgcttgcagatgccataatttcttcttcatccttccacaatgagctcggggacctgctagttcagtgtag 51140279  T
Q  503 gggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcct 602  Q
    |||||||||||| ||||| ||||||||| |||||| ||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||    
T  51140278 gggtctcttggctaccaacttcgactttatagtgtcgtttattcggaagcaagcgaatagggttgcacatagcatagctagagcatccttatgccatcct 51140179  T
Q  603 agctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaattttggttttact 681  Q
    ||| | | ||||| ||||||| || || ||||| |||||||||||||||||||||||||| ||||||| || |||||||    
T  51140178 agcccccatatcttttatattgtatcagatgatctgtactctataattattaatgaaatgcattaattctgcttttact 51140100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 524 - 682
Target Start/End: Complemental strand, 40927464 - 40927306
Alignment:
Q  524 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattatatt 623  Q
    |||||||||||||| ||| ||| | | ||||||||||||||||||| |||| ||| ||||||||||||||| |||||||| | | | ||| | |||||||    
T  40927464 cgactttgtagtgtcgtttattcgaaggcaagcaaatagggttgcatatagcataactagagcatccttatgtcatcctatcccccatattttttatatt 40927365  T
Q  624 ctaccacatgatttgtactctataattattaatgaaatgtattaattttggttttactc 682  Q
     ||||| ||||| |||||||||||||||||||||||||| ||||| | || ||||||||    
T  40927364 gtaccagatgatctgtactctataattattaatgaaatgcattaactatgcttttactc 40927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 5187330 - 5187238
Alignment:
Q  35 tgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatt-taagagaaacctatttattcgtgtattttgaagtc 127  Q
    |||||||||||||||| ||||| || ||||||| | | |||||||||||||||||||||  |||||||||  |||||||  | ||||||||||||    
T  5187330 tgttcttaggaattttgtattttgaagtaaaacgattctaatttactattttgaaaattcaaagagaaactcatttatt--tttattttgaagtc 5187238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 605
Target Start/End: Complemental strand, 52964203 - 52964156
Alignment:
Q  558 aatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    ||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  52964203 aatagggttgctcatagtatagctagatcttccttatctcatcctagc 52964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 605
Target Start/End: Complemental strand, 54548380 - 54548333
Alignment:
Q  558 aatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||    
T  54548380 aatagagttgctcatagtatagctagagcttccttatctcatcctagc 54548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 605
Target Start/End: Original strand, 38475645 - 38475686
Alignment:
Q  564 gttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  38475645 gttgcacatagtataactagagcatccttatctcaccctagc 38475686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 206 - 670
Target Start/End: Complemental strand, 21730231 - 21729772
Alignment:
Q  206 ctggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttgatggg 305  Q
    |||||||||| |||||||||||||||     |||||||||||||||||   | |||||   |||||| |||  ||||| | |||||||||||||||||||    
T  21730231 ctggtgtgataaaatgtaatgtagacgttgcaatattccacaataacacggtaggatacaaaatgtgtttccagaactctttgggccacttcttgatggg 21730132  T
Q  306 gaaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttccaca 405  Q
    ||| ||||||||| | ||| |||   |||  |||||||||| |||||||||  |||| |||| ||||||||||| | |||||  ||  | |||| |||||    
T  21730131 gaattctgcccacattcactcctcagtatcagtcctagaagtagaagctattgcattgcttgcagcaatcaacacgactattccac--ttggttaccaca 21730034  T
Q  406 atgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtagggg 505  Q
    ||||||| |||||||  ||||||||||| |||||||| ||||||||||  |||||| |  | ||||  ||||| ||||||||| ||| |||| |||||||    
T  21730033 atgttatgtttgaaacagacaacaagtcacttgcagatgccataaactattcttcacctttacacaacgagcttggggacctgctagttcagagtagggg 21729934  T
Q  506 tctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
     |||||| | ||   ||||||||||||||||| ||||||| ||| |||| |||||| |||||||||||| ||||||| | ||||||||||||||||||||    
T  21729933 cctcttgtctac---tttcgactttgtagtgtcgttcattcggaggcaaccaaataaggttgcacatagcatagctacaacatccttatctcatcctagc 21729837  T
Q  606 tctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaatt 670  Q
     | | ||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  21729836 ccccatatcttttatattgtaccacatgatgtgtactctataattattaatgaaatgcattaatt 21729772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 401 - 670
Target Start/End: Complemental strand, 14453611 - 14453346
Alignment:
Q  401 ccacaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgt 500  Q
    |||||||||||| |||||||  |||| ||||||||||||||| ||||||||||| ||||||  | ||||||  ||||| ||||||||| ||| |||||||    
T  14453611 ccacaatgttatgtttgaaacagacagcaagtcgcttgcagatgccataaactcttcttcactcttccacaacgagcttggggacctgctagttcagtgt 14453512  T
Q  501 aggggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcac----ataggatagctagagcatccttatct 596  Q
    ||||  |||||||| ||   ||||||||||||||||||||||||| ||| ||||||||||| ||||||||    |||| |||||||||||||||||||||    
T  14453511 agggccctcttggctac---tttcgactttgtagtgttgttcattcggaggcaagcaaataaggttgcacatatatagtatagctagagcatccttatct 14453415  T
Q  597 catcctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaatt 670  Q
    ||||||||| | | ||||| ||||||| || |||||||| |||||||     ||||||||||||||||||||||    
T  14453414 catcctagcccccatatcttttatattgtaacacatgatgtgtactc-----ttattaatgaaatgtattaatt 14453346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 9e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 11991310 - 11991118
Alignment:
Q  8 acttaggtagtaaaagaccgaaagccttgttcttaggaattttatatttgatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatt 107  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||    
T  11991310 acttgggtagtaaaaggtcgaaagccttgttcttaggaattttatatttgatgtaaaacaactctgatttactattttgaaaatttaagagaaacctgtt 11991211  T
Q  108 tattcgtgtattttgaagtctatgagttttcagtttctcctattatttataagnnnnnnnntaattattcatctttttcactaagaaatgtata 201  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  11991210 tattcatgtattttgaagcctatgagttttcagtttctcctattatttataag-aaaaaaataattattcatctttttcactaagaaatgtata 11991118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 605
Target Start/End: Complemental strand, 5185539 - 5185486
Alignment:
Q  552 caagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||    
T  5185539 caagctaatagggttgctcatagtatagctagagcttccttatctcatcttagc 5185486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 605
Target Start/End: Complemental strand, 38761447 - 38761390
Alignment:
Q  548 gaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    ||||||||| |||| |||||| ||||| || |||||||||||||||||||| ||||||    
T  38761447 gaagcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagc 38761390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 605
Target Start/End: Complemental strand, 54421494 - 54421415
Alignment:
Q  526 actttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    |||||||||||| ||| ||| ||| |||||| |||| |||||  ||||| || |||||||| |||||||| |||||||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagc 54421415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 207 - 505
Target Start/End: Original strand, 14648297 - 14648593
Alignment:
Q  207 tggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttgatgggg 306  Q
    |||||||||||||||||||||||||     |||||||||||||||||   | ||||| |||||||| ||| | || | ||||||||||||||||||||||    
T  14648297 tggtgtgatcaaatgtaatgtagacgttgcaatattccacaataacacggtaggatacggaatgtgtttccgaaaatctgtgggccacttcttgatgggg 14648396  T
Q  307 aaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttccacaa 406  Q
    |||||||| ||||| |||  ||   |||  || |||||||||||||||||  |||| |||| ||||||||||| |||||||| ||  | |||| ||||||    
T  14648397 aaatctgcacaccttcacttctcagtatcagtactagaagcagaagctattgcattgcttgcagcaatcaacacggctatttcac--ttggttaccacaa 14648494  T
Q  407 tgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtagggg 505  Q
    |||| | |||||||  |||| ||||||||||||||| ||||||||||| |||||| || ||||||  ||||| ||||||||| ||| ||||||||||||    
T  14648495 tgttctgtttgaaacagacagcaagtcgcttgcagatgccataaactcttcttcacccttccacaacgagcttggggacctgctagttcagtgtagggg 14648593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 521 - 670
Target Start/End: Original strand, 14650984 - 14651130
Alignment:
Q  521 tttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattat 620  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||||||   |||||||||||||| | | ||||| ||||    
T  14650984 tttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14651080  T
Q  621 attctaccacatgatttgtactctataattattaatgaaatgtattaatt 670  Q
    ||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  14651081 attataccacatgatgtgtactctataattattaatgaaatgcattaatt 14651130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 521 - 670
Target Start/End: Original strand, 14660775 - 14660921
Alignment:
Q  521 tttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattat 620  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||||||   |||||||||||||| | | ||||| ||||    
T  14660775 tttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14660871  T
Q  621 attctaccacatgatttgtactctataattattaatgaaatgtattaatt 670  Q
    ||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  14660872 attataccacatgatgtgtactctataattattaatgaaatgcattaatt 14660921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 41313136 - 41313007
Alignment:
Q  13 ggtagtaaaagaccgaaagccttgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatttatt 111  Q
    |||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |||||||| ||||||||| ||||||||    
T  41313136 ggtagtgaaaggcggaaagccttgttcttaggaattttatattttgatgtaaaacaactctgatttactattctgaaaattcaagagaaacttatttatt 41313037  T
Q  112 cgtgtattttgaagtctatgagttttcagtt 142  Q
    |   | |||||||||| || |||||||||||    
T  41313036 c-aattttttgaagtcaattagttttcagtt 41313007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 25218316 - 25218409
Alignment:
Q  45 aattttatatttgatgtaaaacaactttaatttactattttgaaaatt-taagagaaacctatttattcgtgtattttgaagtctatgagtttt 137  Q
    |||| ||| |||||||||| |||||| |||||||||||||||||||||  ||||||||| |||||||  || |||||| ||||| | |||||||    
T  25218316 aattatatttttgatgtaagacaactctaatttactattttgaaaattcaaagagaaacttatttatgggtctattttaaagtcgacgagtttt 25218409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 605
Target Start/End: Original strand, 28037673 - 28037720
Alignment:
Q  558 aatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    ||||||||||| ||||| ||||||||||| || |||||||||||||||    
T  28037673 aatagggttgctcatagtatagctagagcttctttatctcatcctagc 28037720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 605
Target Start/End: Complemental strand, 33978242 - 33978188
Alignment:
Q  551 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||    
T  33978242 gcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagc 33978188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 27643429 - 27643376
Alignment:
Q  551 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 604  Q
    |||||| |||| |||||| ||||| || |||||||||||||||||||| |||||    
T  27643429 gcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctag 27643376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 403 - 668
Target Start/End: Complemental strand, 8323741 - 8323479
Alignment:
Q  403 acaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtag 502  Q
    |||||||||| |||||||  || | ||||| ||||||||| |||||||| || |||||| |  | ||||  ||||| ||||||||| ||| |||||||||    
T  8323741 acaatgttatgtttgaaacagagagcaagttgcttgcagatgccataaattcttcttcacctttacacaacgagcttggggacctgctagttcagtgtag 8323642  T
Q  503 gggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcct 602  Q
    |||||||||||  ||   ||||||||||||||| | ||||||| | |  ||| ||||||  ||||||||||| ||| |||||||||||||||||||||||    
T  8323641 gggtctcttggttac---tttcgactttgtagtatcgttcattcgaagacaaacaaataaagttgcacatagcataactagagcatccttatctcatcct 8323545  T
Q  603 agctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaa 668  Q
    | | | | ||||| ||||| | | ||||||||| ||||| |||||||||||||||||||| |||||    
T  8323544 aacccccatatcttttataatgttccacatgatgtgtacgctataattattaatgaaatggattaa 8323479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 19216444 - 19216572
Alignment:
Q  13 ggtagtaaaagaccgaaagccttgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatttatt 111  Q
    |||||| |||| | ||||||||||||||||| |||||||||||| |||||||||||||| | |||||||||| |||||||| ||||||||| ||||||||    
T  19216444 ggtagtgaaaggcggaaagccttgttcttag-aattttatattttgatgtaaaacaactctgatttactattctgaaaattcaagagaaacttatttatt 19216542  T
Q  112 cgtgtattttgaagtctatgagttttcagtt 142  Q
    |   | |||||||||| ||||||||||||||    
T  19216543 c-aattttttgaagtcaatgagttttcagtt 19216572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 608
Target Start/End: Original strand, 4244400 - 4244457
Alignment:
Q  551 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctct 608  Q
    |||||||||||| | ||| ||||| |||||||||||||| ||||||||||||||||||    
T  4244400 gcaagcaaatagagctgctcatagtatagctagagcatctttatctcatcctagctct 4244457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 605
Target Start/End: Complemental strand, 36757042 - 36756962
Alignment:
Q  525 gactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    ||||||||||||| ||| ||| ||| |||||| ||||  ||||| ||||| || |||||||| |||||||| |||||||||    
T  36757042 gactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagc 36756962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2006 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold2006
Description:

Target: scaffold2006; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 939 - 810
Alignment:
Q  13 ggtagtaaaagaccgaaagccttgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatttatt 111  Q
    |||||| |||| | |||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| |||||||| ||||||||| ||||||||    
T  939 ggtagtgaaaggcggaaagccttgttgttaggaattttatattttgatgtaaaacaactcttatttactattctgaaaattcaagagaaacttatttatt 840  T
Q  112 cgtgtattttgaagtctatgagttttcagtt 142  Q
    |   | |||||||||| ||||||||||||||    
T  839 c-aattttttgaagtcaatgagttttcagtt 810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 2188797 - 2188897
Alignment:
Q  13 ggtagtaaaagaccgaaagccttgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatttatt 111  Q
    |||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||||| ||||||||| ||||||||    
T  2188797 ggtagtgaaaggcggaaagccttgttcttaggaattttatattttgatgtaaaacaactttgatttcctattctgaaaattcaagagaaacttatttatt 2188896  T
Q  112 c 112  Q
    |    
T  2188897 c 2188897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 19632109 - 19632010
Alignment:
Q  13 ggtagtaaaagaccgaaagccttgttcttaggaattttata-tttgatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatttatt 111  Q
    |||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||| |||| ||| ||||||||| ||||||||    
T  19632109 ggtagtgaaaggcggaaagccttgttcttaggaattttatattttgatgtaaaacaactctgatctactattctgaagattcaagagaaacttatttatt 19632010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 2582790 - 2582883
Alignment:
Q  46 attttatattt-gatgtaaaacaactttaatttactattttgaaaattt-aagagaaacctatttattcgtgtattttgaagtctatgagtttt 137  Q
    ||||||||||| ||||||| ||| || | || || |||||||||||||| ||||||||| |||||||| ||||| ||| ||||| |||||||||    
T  2582790 attttatattttgatgtaagacacctctgatctaatattttgaaaatttaaagagaaacttatttatttgtgtaatttaaagtcaatgagtttt 2582883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 10296076 - 10296160
Alignment:
Q  54 tttgatgtaaaacaactttaatttactattttgaaaattt-aagagaaacctatttattcgtgtattttgaagtctatgagtttt 137  Q
    |||||||||| |||  | |||| || |||||||||||||| ||||||||| |||||||| ||||| ||| ||||| |||||||||    
T  10296076 tttgatgtaagacacatctaatctaatattttgaaaatttaaagagaaacttatttatttgtgtaatttaaagtcaatgagtttt 10296160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 603
Target Start/End: Original strand, 513846 - 513925
Alignment:
Q  524 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatccta 603  Q
    |||||||||||||| ||   || ||| |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||    
T  513846 cgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatccta 513925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 29823566 - 29823666
Alignment:
Q  13 ggtagtaaaagaccgaaagccttgttcttaggaattttatattt-gatgtaaaacaactttaatttactattttgaaaatttaagagaaacctatttatt 111  Q
    |||||| |||| | |||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||| |||| ||||||||||||| ||||||||    
T  29823566 ggtagtgaaaggcggaaagctttgttcttaggaattttatattttgatgtaaaacaactctgatttactattctgaagatttaagagaaacttatttatt 29823665  T
Q  112 c 112  Q
    |    
T  29823666 c 29823666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 604
Target Start/End: Original strand, 11629494 - 11629574
Alignment:
Q  524 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 604  Q
    |||||||||||||| ||   || ||| |||||||||||| ||||| ||||| || ||||||||||| |||||||| |||||    
T  11629494 cgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctag 11629574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 16484214 - 16484161
Alignment:
Q  551 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 604  Q
    |||||| |||| |||||| ||||| || |||||||||||||||||||| |||||    
T  16484214 gcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctag 16484161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 605
Target Start/End: Complemental strand, 1635 - 1554
Alignment:
Q  524 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 605  Q
    |||||||||||||| ||   || ||| |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||    
T  1635 cgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagc 1554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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