View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871-Insertion-6 (Length: 697)
Name: NF5871-Insertion-6
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 207 - 646
Target Start/End: Original strand, 33781833 - 33782269
Alignment:
| Q |
207 |
cagagtaaattgacccatgttgttttttgagaatgaa-tattgaaaagggtgattgaaacaaacctgtttgagtaaattaacggattggtttatgtttgg |
305 |
Q |
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| T |
33781833 |
cagagtaaattgacccatgttgttttttgagaatgaaatattgaaaagggtgattgaaacaaacctgtttgagtaaattaacggattggtttatgtttga |
33781932 |
T |
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| Q |
306 |
atttgaaaggtcgataagattgaggatagagaattttgttgggtcagaaacaggggattctgtttctttgctctgttttcccatgttttggaaattgaag |
405 |
Q |
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| T |
33781933 |
atttgaaaggtcgataagattgaggatagagaattttgttgggtcagaaacaggggattctgtttctttgctctgttttcccatgttttggaaattgaag |
33782032 |
T |
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| Q |
406 |
aagaatgaagaaaaaagaggaccttaaaaaccactttgaattacaaacacaaactagtgaatggcgttgtgttgtgtttctttgctnnnnnnnnnnnnnn |
505 |
Q |
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| T |
33782033 |
aagaatgaagaaaaaagaggaccttaaaaaccactttgaattacaaacacaaactagtgaatggcgttgtgttgtgtttctttgct----tatatatata |
33782128 |
T |
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| Q |
506 |
nnngtgtgtgcgcgcaccatttgcacaaacaccccacaccatttgccatcattcataattgcatttannnnnnnaacatatagtttcttgaataaaaact |
605 |
Q |
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| T |
33782129 |
tatgtgtgtgtgtgcaccatttgcacaaacaccccacaccatttgccaccattcataattgcatttatttttttaacatatagtttcttgaataaaaact |
33782228 |
T |
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| Q |
606 |
caatttggtctttggaccaatttaggtagacaacaaccact |
646 |
Q |
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| T |
33782229 |
caatttggtctttggacaaatttaggtagacaacaaccact |
33782269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 33781625 - 33781780
Alignment:
| Q |
9 |
gtatatcctctatgtttttcattcctcaaaatcttcatcttttccttcaaaggaagggtgataaatctcttactttgttcaaaaacctcatccatgaatt |
108 |
Q |
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| T |
33781625 |
gtatatcctctatgtttttcattcctcaaaatcttcatcttttccttcaaaggaagggtgaaaaatcgcttactttgttcaaaaacctcatccatgaatt |
33781724 |
T |
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| Q |
109 |
cctcactaattccatggtttacaacatagaaaaaaccagaatccaaacacgcctta |
164 |
Q |
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| T |
33781725 |
cctcactaattccatggtttacaacatagaaaaaaccagaatccaaacacgcctta |
33781780 |
T |
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Back To:
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