View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871-Insertion-8 (Length: 517)
Name: NF5871-Insertion-8
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871-Insertion-8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 9e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 304 - 517
Target Start/End: Complemental strand, 35037438 - 35037220
Alignment:
| Q |
304 |
aacatgcatgcacaatctaaaaccaatctaatataaaaccaatgtattactcaattcttcatccattc-----ctattatagatttgtatatatacgatc |
398 |
Q |
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| T |
35037438 |
aacatgcatgcacaatctaaaaccaatctaatataaaaccaatgtattactcaattcttcatccatttaatttctattatagatttgtatatatacgatc |
35037339 |
T |
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| Q |
399 |
attaaatagtcnnnnnnnnnngtttacaagattattaaatagtctattacaacaacgaatatttaatcactaaatatattagactatttgaaaataatga |
498 |
Q |
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| T |
35037338 |
attaaatagtcttttttttttgtttacacgattattcaatagtctattacaacaacgaatatttaatcgctaaatatattagactatttgaaaataatga |
35037239 |
T |
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| Q |
499 |
gatcataatyaatattaga |
517 |
Q |
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| T |
35037238 |
gatcataattaatattaga |
35037220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 35037576 - 35037469
Alignment:
| Q |
201 |
taatatgaacaatctggttcacctggatgctgtggataagattcagaatctattgtttcacctacctcaatttaatcatctacagtgagcctgaaacaaa |
300 |
Q |
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| T |
35037576 |
taatatgaacaatctggttcacctggatgctgtggataagattcagaatctattgtttcacctacctcaatttaatcatctacaatgagcctgaaacaaa |
35037477 |
T |
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| Q |
301 |
agcaacat |
308 |
Q |
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| T |
35037476 |
agcaacat |
35037469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 35037719 - 35037638
Alignment:
| Q |
121 |
gcaactagaggaataaattatgtattaagtatcaacataactaataagaacaaaatatgtagaaatacattgtacgttacta |
202 |
Q |
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| T |
35037719 |
gcaactagaggaataaattatgtattaagtatcaacataactaataagaacaaaatatgtaaaaatacattgtacgttacta |
35037638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 35037766 - 35037716
Alignment:
| Q |
9 |
taatggactggctggaggagtagagatcattcatcccatttgaccctgcaa |
59 |
Q |
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| T |
35037766 |
taatggactggctggaggagtagagatcattcatcccatttgaccctgcaa |
35037716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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