View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871-Insertion-9 (Length: 435)
Name: NF5871-Insertion-9
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871-Insertion-9 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 435
Target Start/End: Complemental strand, 11405748 - 11405322
Alignment:
| Q |
9 |
ctcatgatgcatctaaacaaagaaaagataaaaagtataaaaacaattaatgttcatgttagttaagaatgaaaacataagacaaatgagtattagnnnn |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11405748 |
ctcatgatgcatctaaacaaagaaaagataaaaagtataaaaacaattaatgttcatgttagttaagaatgaaaacataagacaaatgagtattagaaaa |
11405649 |
T |
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| Q |
109 |
nnnnnn-gtagtgagtaaacctgctatgcaatcctcactactgagaaataatgaagggggtctttttgaagtaaagttttgatagcttccatggtaatgt |
207 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11405648 |
aaaaaaagtagtgagtaaacctgctctgcaatcttcactactgagaaataatgaagggggtatttttgaagtaaagttttgatagcttccatggtaatgt |
11405549 |
T |
|
| Q |
208 |
ttttggacgaaattacactggaggaagtgaaattggaagtagttgaagtttgtggtttctatagcataacaaatctgatggtnnnnnnnnncagtaatgt |
307 |
Q |
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| T |
11405548 |
ttttggacgaaattacactagaggaagtgaaattgaaagtagttgaagtttgtggtttctatagcataacaaatctgatggt-aaaaaaaacagtaatgt |
11405450 |
T |
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| Q |
308 |
acttttgtcatatagaattttatcctaaccaaataaaatccgatattttaaaaaagttctttgattagaaatttaaaagttattaaatttgatagatgtg |
407 |
Q |
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|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
11405449 |
acttttgtcatatagaatcttatcatatccaaataaaatccgatattttaaaaaagttctttgattagaaatttaaaaattattaaatttgataagtgtg |
11405350 |
T |
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| Q |
408 |
tataatacattagattgtgtaccattga |
435 |
Q |
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| T |
11405349 |
tataatacattagattgtgtaccattga |
11405322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 36 - 435
Target Start/End: Complemental strand, 17024899 - 17024500
Alignment:
| Q |
36 |
ataaaaagtataaaaacaattaatgttcatgttagttaagaatgaaaacataagacaaatgagtattagnnnnnnnnnngtagtgagtaaacctgctatg |
135 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| | | ||||||||||| || | |
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| T |
17024899 |
ataaatagtataaaaacaattaatgttgatgttagttaagaatgaaaacataattaaaatcagtatta-caaaaaaaaagcattgagtaaaccttctcta |
17024801 |
T |
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| Q |
136 |
caatcctcactactgagaaataatgaagggggtctttttgaagtaaagttttgatagcttccatggtaatgtttttggacgaaattacactgga-ggaag |
234 |
Q |
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||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |
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| T |
17024800 |
caatcttcactactgagaaataatcaagggggtcttttttaagtaaagttttgatagcttccatggtaatgtttttggaataaattacaatggattgaat |
17024701 |
T |
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| Q |
235 |
tgaaattggaagtagttgaagtttgtggtttctatagcataacaaatctgatggtnnnnnnnnncagtaatgtacttttgtcatatagaattttatccta |
334 |
Q |
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| T |
17024700 |
tgaaattggaagtagttgaagtttgtggtttctatagcataaaaaagctgatggtaaaaaaatattgtaatgtacttttgtcatatagaatcttatccta |
17024601 |
T |
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| Q |
335 |
accaaataaaatccgatattttaaaaaagttctttgattagaaatttaaaagttattaaatttgatagatgtgtataatacattagattgtgtaccattg |
434 |
Q |
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|||||| |||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
17024600 |
tccaaattaaatccgatatttttaaaaagttatttgattataaatttaaaagtgattaaatttgataactgtgtatgatacattagattgtgtaccattg |
17024501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 301 - 435
Target Start/End: Original strand, 115360 - 115493
Alignment:
| Q |
301 |
gtaatgtacttttgtcatatagaattttatcctaaccaaataaaatccgatattttaaaaaagttctttgattagaaatttaaaagttattaaatttgat |
400 |
Q |
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||||||||||||| ||||||||||| |||||||| |||||| |||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
115360 |
gtaatgtacttttttcatatagaatcttatcctatccaaattaaatcccatattttaaaaa-gttatttgattagaaattaaaaagttattaaatttgat |
115458 |
T |
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| Q |
401 |
agatgtgtataatacattagattgtgtaccattga |
435 |
Q |
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| T |
115459 |
aggtgtgtatgatacattagattgtgtaccattga |
115493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 115240 - 115347
Alignment:
| Q |
155 |
ataatgaagggggtctttttgaagtaaagttttgatagcttccatggtaatgtttttggacgaaattacactgga-ggaagtgaaattggaagtagttga |
253 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||| ||| ||||||||||||||||||| |
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| T |
115240 |
ataatcaagtgggtctttttgaagtaaagttttgatagcttctctggtaatgtttttggaataaaatacaatggattgaattgaaattggaagtagttga |
115339 |
T |
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| Q |
254 |
agtttgtg |
261 |
Q |
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|||||||| |
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| T |
115340 |
agtttgtg |
115347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 115167 - 115243
Alignment:
| Q |
9 |
ctcatgatgcatctaaacaaagaaaagataaaaagtataaaaacaattaatgttcatgttagttaagaatgaaaacataa |
88 |
Q |
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|||| |||||||||||||| | |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
115167 |
ctcaggatgcatctaaacagaaaaaa---aaatagtataaaaacaattaatgttgatgttagttaagaatgaaaacataa |
115243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 23569214 - 23569314
Alignment:
| Q |
124 |
aaacctgctatgcaatcctcactactgagaaataatgaagggggtctttttgaagtaaagttttgatagcttccatggtaatgtttttggacgaaattac |
223 |
Q |
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||||||||| ||||||| |||| || |||||||||||| ||||||||||||||| |||||||||| | |||||||||| || |||| ||| ||||||| |
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| T |
23569214 |
aaacctgctctgcaatcttcaccaccgagaaataatgagtggggtctttttgaagcaaagttttgaaaccttccatggtgatattttgggaataaattac |
23569313 |
T |
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| Q |
224 |
a |
224 |
Q |
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| T |
23569314 |
a |
23569314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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