View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871_high_1 (Length: 736)

Name: NF5871_high_1
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871_high_1
NF5871_high_1
[»] chr8 (2 HSPs)
chr8 (1-713)||(9593120-9593832)
chr8 (162-241)||(28437331-28437410)
[»] chr3 (2 HSPs)
chr3 (136-295)||(41895782-41895941)
chr3 (136-251)||(34976168-34976283)
[»] chr1 (2 HSPs)
chr1 (138-300)||(34645974-34646136)
chr1 (162-280)||(24878863-24878981)
[»] chr2 (1 HSPs)
chr2 (141-280)||(39741044-39741183)
[»] chr4 (2 HSPs)
chr4 (156-274)||(22483406-22483524)
chr4 (156-241)||(7435211-7435296)
[»] chr5 (1 HSPs)
chr5 (160-241)||(13481035-13481116)


Alignment Details
Target: chr8 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 1 - 713
Target Start/End: Complemental strand, 9593832 - 9593120
Alignment:
Q  1 tatgtttatattctatggattcatgtcacatgatgaagtatatataactatataggtatatactcatggaagggttatctcctaattcatgtccaaggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9593832 tatgtttatattctatggattcatgtcacatgatgaagtatatataactatataggtatatactcatggaagggttatctcctaattcatgtccaaggca 9593733  T
Q  101 aggattggagaagaaagcaaggccacaagagcaaataaactgtccaaggtgcaattcaaccaacacaaaattttgttattataacaactacagtctcaca 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9593732 aggattagagaagaaagcaaggccacaagagcaaataaactgtccaaggtgcaattcaaccaacacaaaattttgttattataacaactacagtctcaca 9593633  T
Q  201 caaccaagatacttttgcaagacatgtagaaggtattggactgaaggaggatctctaagaaatgttccggttggaggtggttcaagaaagaacaagaaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9593632 caaccaagatacttttgcaagacatgtagaaggtattggactgaaggaggatctctaagaaatgttccagttggaggtggttcaagaaagaacaagaaaa 9593533  T
Q  301 ttccatcatcattagccaaccctaataatagttcatcaaaaattcctgacctaaatccaccaaccctacaagtttcacatctttcatctcaaaaccctaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9593532 ttccatcatcattagccaaccctaataatagttcatcaaaaattcctgacctaaatccaccaaccctacaagtttcacatctttcatctcaaaaccctaa 9593433  T
Q  401 aatacaaggaggccaagatcttaacctagcttttccatctatggaaaactatcatcataatcatggtatgccatcttcatatgttgagatgcataacaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9593432 aatacaaggaggccaagatcttaacctagcttttccatctatggaaaactatcatcataatcatggtatgccatcttcatatgttgagatgcataacaat 9593333  T
Q  501 aatggatcatcttcttcagctcttgacctacttaggtcaagcatggcatctagaggcatgaacccttatgctaataacaataatttagggttgccaaact 600  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9593332 aatgaatcatcttcttcagctcttgacctacttaggtcaagcatggcatctagaggcatgaacccttatgctaataacaataatttagggttgccaaact 9593233  T
Q  601 caaatgctatttatccatctggattcaccatgcaagaagttaaacctagtcttggattttcaattgatggaattaatggaaatagatcatatgatcatgt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9593232 caaatgctatttatccatctggattcaccatgcaagaagttaaacctagtcttggattttcaattgatggaattaatggaaatagatcatatgatcatgt 9593133  T
Q  701 tcaagtccaagaa 713  Q
    |||||| ||||||    
T  9593132 tcaagttcaagaa 9593120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 28437331 - 28437410
Alignment:
Q  162 aacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattggac 241  Q
    ||||||||||| ||||| || ||||||||||||||||| ||||||||| | || ||||| ||||| ||||| ||||||||    
T  28437331 aacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattggac 28437410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 41895782 - 41895941
Alignment:
Q  136 taaactgtccaaggtgcaattcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggta 235  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| || || ||||| || ||| |||||||||| ||||||||||| || |||||||||||    
T  41895782 taaactgtccaaggtgcaattcaactaacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgtagaaggta 41895881  T
Q  236 ttggactgaaggaggatctctaagaaatgttccggttggaggtggttcaagaaagaacaa 295  Q
    |||||||||||| || ||| ||||||||||||| || || |||||||||||||| |||||    
T  41895882 ttggactgaaggtggttctttaagaaatgttcctgtaggtggtggttcaagaaaaaacaa 41895941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 34976283 - 34976168
Alignment:
Q  136 taaactgtccaaggtgcaattcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggta 235  Q
    |||| |||||||||||  |||||||  |||| ||||| || || || ||||| ||||||||| | || ||||| ||||| |||||||| |||||||||||    
T  34976283 taaaatgtccaaggtgtgattcaactcacaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggta 34976184  T
Q  236 ttggactgaaggagga 251  Q
    ||||||  ||||||||    
T  34976183 ttggaccaaaggagga 34976168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 138 - 300
Target Start/End: Original strand, 34645974 - 34646136
Alignment:
Q  138 aactgtccaaggtgcaattcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtatt 237  Q
    |||||||||||||| |||||||  ||||||||||||||||| || |||||||| ||| | |||||||||||||| || ||||| ||||||||||||||||    
T  34645974 aactgtccaaggtgtaattcaattaacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtatt 34646073  T
Q  238 ggactgaaggaggatctctaagaaatgttccggttggaggtggttcaagaaagaacaagaaaa 300  Q
    ||||| |||| |||||  | |||||  |||| ||||| |||||||||||||| ||||| ||||    
T  34646074 ggactcaaggtggatccattagaaacattcctgttggtggtggttcaagaaaaaacaacaaaa 34646136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 24878863 - 24878981
Alignment:
Q  162 aacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattggactgaaggaggatctctaagaa 261  Q
    ||||||||||| || || || || ||||||||  | || ||||||||||| ||||||||   ||| ||||||||||||||  |||| ||||| || ||||    
T  24878863 aacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaa 24878962  T
Q  262 atgttccggttggaggtgg 280  Q
    ||||||| ||||| |||||    
T  24878963 atgttcctgttggtggtgg 24878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 39741044 - 39741183
Alignment:
Q  141 tgtccaaggtgcaattcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattgga 240  Q
    |||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| || || |||||||| || |||||  | || |||||||||||||    
T  39741044 tgtccaagatgcaactcaaccaacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattgga 39741143  T
Q  241 ctgaaggaggatctctaagaaatgttccggttggaggtgg 280  Q
    |  |||| ||| |  |||| |||||||| |||||||||||    
T  39741144 ccaaaggtggaacattaaggaatgttcctgttggaggtgg 39741183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 22483524 - 22483406
Alignment:
Q  156 tcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattggactgaaggaggatctc 255  Q
    |||| |||||| ||||||||||| || ||||| ||||||||  ||||||||||||| || |||||| | ||||| || ||||||||| |||| ||  | |    
T  22483524 tcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaaaggtggtacac 22483425  T
Q  256 taagaaatgttccggttgg 274  Q
    |||| |||||||| |||||    
T  22483424 taaggaatgttcctgttgg 22483406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 7435211 - 7435296
Alignment:
Q  156 tcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattggac 241  Q
    |||||||||||||||||||| || |  ||||||||||||||| | || || ||| |||| |||||||| || |||||||| |||||    
T  7435211 tcaaccaacacaaaattttgctacttcaacaactacagtctctctcagcccagacacttctgcaagacttgcagaaggtactggac 7435296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 13481035 - 13481116
Alignment:
Q  160 ccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattggac 241  Q
    ||||||||||||| || || || |||||||| ||  | |||||||||||| | || ||||| ||||||||||| ||||||||    
T  13481035 ccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattggac 13481116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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