View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_high_13 (Length: 373)
Name: NF5871_high_13
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 13079551 - 13079915
Alignment:
| Q |
1 |
tcttctcatatttttctccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatt |
100 |
Q |
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| T |
13079551 |
tcttctcatatttttctccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatt |
13079650 |
T |
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| Q |
101 |
tggttttcttccatcagatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctatctctagttgtgtctccctcaaaa |
200 |
Q |
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| T |
13079651 |
tggttttcttccatcaaatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctatctctagtagtgtctccctcaaaa |
13079750 |
T |
|
| Q |
201 |
ggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttggcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079751 |
ggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttggcca |
13079850 |
T |
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| Q |
301 |
caattctctccttgaattcttcttcttgtgtcttttccatcgaactttcactttcaacctatgct |
365 |
Q |
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| T |
13079851 |
caattctctccttgaattcttcttcttgtgtcttttccatcgaactttcactttcaaccaatgct |
13079915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 13075344 - 13075639
Alignment:
| Q |
1 |
tcttctcatatttttctccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075344 |
tcttctcatatttttctccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatt |
13075443 |
T |
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| Q |
101 |
tggttttcttccatcagatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctatctctagttgtgtctccctcaaaa |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13075444 |
tggttttcttccatcaaatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctgtctctagttgtgtctccctcaaaa |
13075543 |
T |
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| Q |
201 |
ggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttg |
296 |
Q |
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| T |
13075544 |
ggctcatttggttcaacatttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttg |
13075639 |
T |
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