View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871_high_2 (Length: 633)

Name: NF5871_high_2
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871_high_2
NF5871_high_2
[»] chr4 (7 HSPs)
chr4 (288-625)||(49200683-49201015)
chr4 (1-222)||(49201081-49201302)
chr4 (317-380)||(12801320-12801383)
chr4 (306-380)||(6507686-6507756)
chr4 (336-396)||(33617393-33617453)
chr4 (86-124)||(36479463-36479501)
chr4 (304-336)||(12213252-12213284)
[»] chr7 (4 HSPs)
chr7 (306-380)||(44472641-44472711)
chr7 (336-380)||(10546472-10546516)
chr7 (306-375)||(18829277-18829342)
chr7 (339-380)||(22022809-22022850)
[»] chr1 (2 HSPs)
chr1 (336-380)||(35155325-35155369)
chr1 (306-378)||(50643014-50643081)
[»] chr2 (3 HSPs)
chr2 (344-380)||(7275437-7275473)
chr2 (336-374)||(17816048-17816086)
chr2 (304-336)||(10317557-10317589)
[»] scaffold0004 (1 HSPs)
scaffold0004 (312-380)||(38023-38087)
[»] chr8 (4 HSPs)
chr8 (312-368)||(33852795-33852847)
chr8 (336-374)||(17925068-17925106)
chr8 (306-380)||(3416880-3416950)
chr8 (306-380)||(5691318-5691388)
[»] chr5 (3 HSPs)
chr5 (306-378)||(6835198-6835266)
chr5 (312-369)||(21086087-21086140)
chr5 (435-523)||(42273215-42273302)
[»] scaffold0031 (1 HSPs)
scaffold0031 (336-374)||(94817-94855)
[»] chr3 (4 HSPs)
chr3 (351-380)||(8014860-8014889)
chr3 (306-380)||(54493468-54493538)
chr3 (312-369)||(33128632-33128685)
chr3 (344-380)||(34921966-34922002)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 288 - 625
Target Start/End: Complemental strand, 49201015 - 49200683
Alignment:
Q  288 gatattaaatctttcttatttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactctccaagta 387  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||||||    
T  49201015 gatattaaatctttcttatttttattatacttgactaaaaagatattaattaaaaacaaataattaacagttaactttaatactttaagctctacaagta 49200916  T
Q  388 ttcatgtttttagctttatgtgaattcctcttgtgtttttcttcactatgaaattggaataatccatgggaatgattttattagctttcttttaaattat 487  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  49200915 ttcatgtttttagctttatgtgaattcctcttgtttttttcttccctatgaaattggaataatctattggaatgattttattagctttcttttaaattat 49200816  T
Q  488 atttgaatattgatagtctgttaagctaccatttatttaactcctaagtaatatcttgtcnnnnnnnnnnnnnctcctaaccaatataactcctaagcta 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||| ||||||||||||||||||    
T  49200815 atttgaatattgatagtctgttaagctaccatttatttaactcctaagtaatatcttgtc-----aaaaaaaactcctaactaatataactcctaagcta 49200721  T
Q  588 ccatttacatgcaatattcatggtgatataattgatga 625  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  49200720 ccatttacacgcaatattcatggtgatataattgatga 49200683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49201302 - 49201081
Alignment:
Q  1 tgggataactctagtgactcttatggtaattcaatctttcttcgtatatgagaagatgtgtcattagatttgatatcatgataaaaaaaatcttttaaaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49201302 tgggataactctaatgactcttatggtaattcaatctttcttcgtatatgagaagatgtgtcattagatttgatatcatgataaa-aaaatcttttaaaa 49201204  T
Q  101 ttctttgaattctaatccattacacacctaacc-nnnnnnnnnnnnnngagtcggttactaaaaattaattcctttcaatatcaagagaaaataaaatga 199  Q
    | ||||||||| |||||||||||||  ||| ||               |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  49201203 tcctttgaattttaatccattacacctctagccaaaaaaaaaaaaaaagagtcggttaataacaattaattcctttcaatatcaagagaaaataaaatga 49201104  T
Q  200 tcgttagtagtttggtaggagat 222  Q
    |||||||||||||||||||||||    
T  49201103 tcgttagtagtttggtaggagat 49201081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 12801383 - 12801320
Alignment:
Q  317 cttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    ||||||||||||||||||||||||| ||||||  ||||| ||||| ||||||||||||||||||    
T  12801383 cttgactcaaaagatattaattaaagacaaacagttaacggttaattttaatactttaaactct 12801320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 6507686 - 6507756
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    ||||| ||||||||||||||||| |||||||    | |||||| ||||| |||||| ||||||||||||||||||    
T  6507686 ttttttttatacttgactcaaaatatattaa----agacaaacaattaatagttaaatttaatactttaaactct 6507756  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 33617453 - 33617393
Alignment:
Q  336 attaaaaacaaacgattaacagttaactttaatactttaaactctccaagtattcatgttt 396  Q
    |||||| |||||| ||||| |||||| |||||||||||||||||| |||| ||||| ||||    
T  33617453 attaaagacaaacaattaagagttaattttaatactttaaactctacaagcattcaggttt 33617393  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 36479463 - 36479501
Alignment:
Q  86 aaaaatcttttaaaattctttgaattctaatccattaca 124  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  36479463 aaaaatcttttaaaattcttagaattctaatccaataca 36479501  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 12213284 - 12213252
Alignment:
Q  304 tatttttattatacttgactcaaaagatattaa 336  Q
    ||||||| |||||||||||||||||||||||||    
T  12213284 tattttttttatacttgactcaaaagatattaa 12213252  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 44472711 - 44472641
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    ||||| |||||||||||||||||  ||||  ||||| |||||| |||||||||||||||||||||||||||||||    
T  44472711 tttttcttatacttgactcaaaa--tatt--ttaaagacaaacaattaacagttaactttaatactttaaactct 44472641  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 10546516 - 10546472
Alignment:
Q  336 attaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||    
T  10546516 attaaagacaaacaattaacagttaattttaatactttaaactct 10546472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 18829277 - 18829342
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaa 375  Q
    ||||| ||||| ||||||||||| |||||||    | |||||| ||||||||||||||||||||||||||    
T  18829277 tttttcttatatttgactcaaaaaatattaa----agacaaacaattaacagttaactttaatactttaa 18829342  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 22022850 - 22022809
Alignment:
Q  339 aaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    |||| ||||| ||||||||||| |||||||||||||||||||    
T  22022850 aaaagcaaacaattaacagttacctttaatactttaaactct 22022809  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 35155325 - 35155369
Alignment:
Q  336 attaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    |||||| |||||| |||||||||||||||||||||||||||||||    
T  35155325 attaaagacaaacaattaacagttaactttaatactttaaactct 35155369  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 50643014 - 50643081
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaact 378  Q
    ||||| |||| ||||||||||||||||||||     | ||||| |||||||||||| ||||||||| ||||||    
T  50643014 tttttcttatccttgactcaaaagatattaa-----agcaaacaattaacagttaattttaatactataaact 50643081  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 7275473 - 7275437
Alignment:
Q  344 caaacgattaacagttaactttaatactttaaactct 380  Q
    ||||| |||||||||||||||||||||||||||||||    
T  7275473 caaacaattaacagttaactttaatactttaaactct 7275437  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 17816086 - 17816048
Alignment:
Q  336 attaaaaacaaacgattaacagttaactttaatacttta 374  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  17816086 attaaagacaaacaattaacagttaactttaatacttta 17816048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 10317589 - 10317557
Alignment:
Q  304 tatttttattatacttgactcaaaagatattaa 336  Q
    ||||||| |||||||||||||||||||||||||    
T  10317589 tatttttcttatacttgactcaaaagatattaa 10317557  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 38087 - 38023
Alignment:
Q  312 ttatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    |||| ||||| |||||||||||||||     |||||| |||||| ||||||||||||||||||||||||    
T  38087 ttatccttgattcaaaagatattaat----gacaaacaattaacggttaactttaatactttaaactct 38023  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 33852847 - 33852795
Alignment:
Q  312 ttatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaat 368  Q
    |||||||||||||||||||||||||    | |||||| |||||||||||||||||||    
T  33852847 ttatacttgactcaaaagatattaa----agacaaacaattaacagttaactttaat 33852795  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 17925106 - 17925068
Alignment:
Q  336 attaaaaacaaacgattaacagttaactttaatacttta 374  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  17925106 attaaacacaaacaattaacagttaactttaatacttta 17925068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 3416880 - 3416950
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    ||||| ||||| || ||||||||||||||||    | |||||| |||||| ||||||||||||| ||||||||||    
T  3416880 tttttcttatatttaactcaaaagatattaa----agacaaacaattaacggttaactttaatattttaaactct 3416950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 5691388 - 5691318
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    ||||| |||| ||||||||||||||||||||  | ||| ||     |||||||||||||||||||||||||||||    
T  5691388 tttttcttattcttgactcaaaagatattaaagataaataac----taacagttaactttaatactttaaactct 5691318  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 6835266 - 6835198
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaact 378  Q
    |||||||||| ||| ||||||||||||||||    |  ||||| ||||||| |||||||||||||||||||||    
T  6835266 tttttattatccttaactcaaaagatattaa----aggcaaacaattaacaattaactttaatactttaaact 6835198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 21086140 - 21086087
Alignment:
Q  312 ttatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaata 369  Q
    |||||||||||||||||||||    ||||| |||||| |||||||||||| |||||||    
T  21086140 ttatacttgactcaaaagata----ttaaagacaaacaattaacagttaattttaata 21086087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 42273215 - 42273302
Alignment:
Q  435 atgaaattggaataatccatgggaatgattttattagctttcttttaaattatatttgaatattgatagtctgttaagctaccatttat 523  Q
    |||||||||||| | || || |||||| |||||| || ||||||||  |||||||||||| |||| || ||||||  ||||||||||||    
T  42273215 atgaaattggaaaattctattggaatggttttatcagttttcttttgtattatatttgaacattggtactctgtt-ggctaccatttat 42273302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 94855 - 94817
Alignment:
Q  336 attaaaaacaaacgattaacagttaactttaatacttta 374  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  94855 attaaagacaaacaattaacagttaactttaatacttta 94817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 380
Target Start/End: Original strand, 8014860 - 8014889
Alignment:
Q  351 ttaacagttaactttaatactttaaactct 380  Q
    ||||||||||||||||||||||||||||||    
T  8014860 ttaacagttaactttaatactttaaactct 8014889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 54493538 - 54493468
Alignment:
Q  306 tttttattatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaatactttaaactct 380  Q
    ||||| |||| |||||||||||| |||||||    |  ||||| ||||||| |||||||||||||||||||||||    
T  54493538 tttttcttatccttgactcaaaatatattaa----aggcaaacaattaacatttaactttaatactttaaactct 54493468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 33128632 - 33128685
Alignment:
Q  312 ttatacttgactcaaaagatattaattaaaaacaaacgattaacagttaactttaata 369  Q
    ||||| |||||||||||||||||||    | |||||| ||||||||||||||||||||    
T  33128632 ttatatttgactcaaaagatattaa----agacaaacaattaacagttaactttaata 33128685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 34922002 - 34921966
Alignment:
Q  344 caaacgattaacagttaactttaatactttaaactct 380  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  34922002 caaacaattaacagttaattttaatactttaaactct 34921966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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