View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_high_21 (Length: 287)
Name: NF5871_high_21
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 26049861 - 26049582
Alignment:
| Q |
1 |
tcatcctatcccaaagggacccaaataaacagtccccttttcagtccaatcctccatccgtgtccattcaaaacaccacacttcaccaactctctttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
26049861 |
tcatcctatcccaaagggacccaaataaacagtccctttttcagtccaatcctccatccgt--ccattcaaaacaccacacttcaccaattctctttttc |
26049764 |
T |
|
| Q |
101 |
tatattaatcttattatcctcctttcattaggagaataaaaaa--tgagacaaaacaagggtatcaagnnnnnnncattacttgacaacaagttttcaca |
198 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
26049763 |
tatattaatcttattatcct---ttcattaggagaaaaaaaaaaatgagacaaaacaagggtatcaagaaaaaaacattacttgacaaccagttttcaca |
26049667 |
T |
|
| Q |
199 |
gaagggcaaaacttaccaacagtactatagcctataggtgttgttctctactaaaacttacaataatcataattactctgtgctc |
283 |
Q |
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| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26049666 |
gtagggcaaaacttgccaacagtactatagcctataggtgttgttctctactaaaacttacaataatcataattactctgtgctc |
26049582 |
T |
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