View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871_high_5 (Length: 533)

Name: NF5871_high_5
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871_high_5
NF5871_high_5
[»] chr2 (9 HSPs)
chr2 (11-514)||(2711511-2712015)
chr2 (276-513)||(2703853-2704090)
chr2 (280-513)||(2716468-2716701)
chr2 (280-513)||(2723091-2723324)
chr2 (280-513)||(2744922-2745155)
chr2 (12-156)||(2716790-2716931)
chr2 (12-156)||(2745243-2745384)
chr2 (12-155)||(2723414-2723554)
chr2 (11-154)||(2704222-2704365)
[»] chr7 (5 HSPs)
chr7 (12-71)||(20285130-20285189)
chr7 (12-71)||(20294847-20294906)
chr7 (12-73)||(20231747-20231808)
chr7 (12-73)||(20243819-20243880)
chr7 (12-73)||(20264206-20264267)
[»] chr4 (2 HSPs)
chr4 (361-405)||(36376868-36376912)
chr4 (361-405)||(36401588-36401632)


Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Complemental strand, 2712015 - 2711511
Alignment:
Q  11 agaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagataataagtggtaggaaaaacacaagtttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2712015 agaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagataataagtggtagaaaaaacacaagtttt 2711916  T
Q  111 cataatcatgagcaagcactcaccctcttagaatatgtaagtctttccaaattgctaattttgcccaatatagggtatannnnnnn-gctataataataa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  2711915 cataatcatgagcaagcactcaccctcttagaatatgtaagtctttccaaattgctaattttgcccaatatagggtatattttttttgctataataataa 2711816  T
Q  210 tatactctttcaaatttgtatacatatagatgatgctgtttattcttcttcnnnnnnnnnnnnnngaaggcatggaaaatatggattgaagagaacattg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||    
T  2711815 tatactctttcaaatttgtatacatatagatgatgctgtttattcttcttcttttttggtttttttaaggcatggaaaatatggattgaagagaacattg 2711716  T
Q  310 tatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattggacttctctgtgtgcaagaaattgcaaagga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711715 tatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattggacttctctgtgtgcaagaaattgcaaagga 2711616  T
Q  410 gagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctcctccatctcaaccggcattccttctaagtcagactgagcat 509  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2711615 gagacctactatggccgcagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaaccggcattccttctaagtcagactgagcat 2711516  T
Q  510 agagg 514  Q
    |||||    
T  2711515 agagg 2711511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 276 - 513
Target Start/End: Complemental strand, 2704090 - 2703853
Alignment:
Q  276 aaggcatggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacata 375  Q
    |||||||||||| |||||| ||||||| | ||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  2704090 aaggcatggaaactatggaatgaagaggagattatatctttgatagatccagaaatatgtaagcctgattatgtggatcagattttgagatgcatacata 2703991  T
Q  376 ttggacttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctcctccatc 475  Q
    |||||||| | |||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  2703990 ttggacttgtttgtgtgcaagaaattgcaaaggagagacctaccatggccacatttgtttcaatgcttaatagtgagattgttaaacttcctcctccatc 2703891  T
Q  476 tcaaccggcattccttctaagtcagactgagcatagag 513  Q
    |||||| |||||| ||| |||  ||| |||||||||||    
T  2703890 tcaacctgcattcattcaaagcaagattgagcatagag 2703853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 280 - 513
Target Start/End: Complemental strand, 2716701 - 2716468
Alignment:
Q  280 catggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattgg 379  Q
    |||||||| |||||| ||||||  |  ||||| |||||||||||| ||||||||||||  |||||| | ||| | | ||||||||||||||||| |||||    
T  2716701 catggaaactatggaatgaagatgaggttgtagctttgatagatcaagaaatatgtaatgctgattatgtgggtaacattttgagatgcatacacattgg 2716602  T
Q  380 acttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctcctccatctcaa 479  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  2716601 acttctttgtgtgcaagaaattgcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctcaa 2716502  T
Q  480 ccggcattccttctaagtcagactgagcatagag 513  Q
    || |||||||||||||||||||||||||||||||    
T  2716501 cctgcattccttctaagtcagactgagcatagag 2716468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 280 - 513
Target Start/End: Complemental strand, 2723324 - 2723091
Alignment:
Q  280 catggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattgg 379  Q
    |||||||| |||||| ||||||  |  ||||| |||||||||||| ||||||||||||  |||||| | ||| | | ||||||||||||||||| |||||    
T  2723324 catggaaactatggaatgaagatgaggttgtagctttgatagatcaagaaatatgtaatgctgattatgtgggtaacattttgagatgcatacacattgg 2723225  T
Q  380 acttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctcctccatctcaa 479  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  2723224 acttctttgtgtgcaagaaattgcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctcaa 2723125  T
Q  480 ccggcattccttctaagtcagactgagcatagag 513  Q
    || |||||||||||||||||||||||||||||||    
T  2723124 cctgcattccttctaagtcagactgagcatagag 2723091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 280 - 513
Target Start/End: Complemental strand, 2745155 - 2744922
Alignment:
Q  280 catggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattgg 379  Q
    |||||||| |||||| ||||||  |  ||||| |||||||||||| ||||||||||||  |||||| | ||| | | ||||||||||||||||| |||||    
T  2745155 catggaaactatggaatgaagatgaggttgtagctttgatagatcaagaaatatgtaatgctgattatgtgggtaacattttgagatgcatacacattgg 2745056  T
Q  380 acttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctcctccatctcaa 479  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  2745055 acttctttgtgtgcaagaaattgcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctcaa 2744956  T
Q  480 ccggcattccttctaagtcagactgagcatagag 513  Q
    || |||||||||||||||||||||||||||||||    
T  2744955 cctgcattccttctaagtcagactgagcatagag 2744922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 2716931 - 2716790
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagataataagtggtaggaaaaacacaagttttc 111  Q
    |||||||||||| |||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||      
T  2716931 gaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 2716832  T
Q  112 ataatcatgagcaagcactcaccctcttagaatatgtaagtcttt 156  Q
    ||||||||   ||||||||||| ||||||| ||||||||||||||    
T  2716831 ataatcat---caagcactcactctcttaggatatgtaagtcttt 2716790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 2745384 - 2745243
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagataataagtggtaggaaaaacacaagttttc 111  Q
    |||||||||||| ||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||      
T  2745384 gaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 2745285  T
Q  112 ataatcatgagcaagcactcaccctcttagaatatgtaagtcttt 156  Q
    ||||||||   ||||||||||| ||||||| ||||||||||||||    
T  2745284 ataatcat---caagcactcactctcttaggatatgtaagtcttt 2745243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 2723554 - 2723414
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagataataagtggtaggaaaaacacaagttttc 111  Q
    |||||||||||| ||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||      
T  2723554 gaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggttttgctcttggagataataagtggtaggaaaaatacaagtttct 2723455  T
Q  112 ataatcatgagcaagcactcaccctcttagaatatgtaagtctt 155  Q
    ||||||||   ||||||||||| ||||||| |||||||||||||    
T  2723454 ataatcat---caagcactcactctcttaggatatgtaagtctt 2723414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 2704365 - 2704222
Alignment:
Q  11 agaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgctcttggagataataagtggtaggaaaaacacaagtttt 110  Q
    |||||| |||||| | |||||||||||||||||||||||| ||||||| ||||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  2704365 agaatacgcaatggaggggttgttttcagagaaatcagatgtttttagctttggggttttgctcctcgagataataagtggtaggaagaacacaagtttt 2704266  T
Q  111 cataatcatgagcaagcactcaccctcttagaatatgtaagtct 154  Q
     |||| |||||||||||||| | |||||||| ||||||||||||    
T  2704265 tataaccatgagcaagcacttaacctcttaggatatgtaagtct 2704222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 20285130 - 20285189
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttg 71  Q
    |||||||||||| |||| || |||||||||||||||||| ||||||||||||| ||||||    
T  20285130 gaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgttttg 20285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 20294847 - 20294906
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttg 71  Q
    |||||||||||| |||| || |||||||||||||||||| ||||||| ||||| ||||||    
T  20294847 gaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttg 20294906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 20231747 - 20231808
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgct 73  Q
    |||||||||||| |||| || |||||||||||||||||| ||||||| ||||| || |||||    
T  20231747 gaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgct 20231808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 20243819 - 20243880
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgct 73  Q
    |||||||||||| |||| || |||||||||||||||||| ||||||| ||||| || |||||    
T  20243819 gaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgct 20243880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 20264206 - 20264267
Alignment:
Q  12 gaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagttttgct 73  Q
    |||||||||||| |||| || ||||||||||| |||||| ||||||| ||||| || |||||    
T  20264206 gaatatgcaatgcaaggattattttcagagaagtcagatgtttttagctttggtgtattgct 20264267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 36376868 - 36376912
Alignment:
Q  361 tgagatgcatacatattggacttctctgtgtgcaagaaattgcaa 405  Q
    |||||||||| || ||||||||||| ||||||||||||| |||||    
T  36376868 tgagatgcattcaaattggacttctgtgtgtgcaagaaaatgcaa 36376912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 36401588 - 36401632
Alignment:
Q  361 tgagatgcatacatattggacttctctgtgtgcaagaaattgcaa 405  Q
    |||||||||| || ||||||||||| ||||||||||||| |||||    
T  36401588 tgagatgcattcaaattggacttctgtgtgtgcaagaaaatgcaa 36401632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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