View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_10 (Length: 494)
Name: NF5871_low_10
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_10 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 34296155 - 34296440
Alignment:
| Q |
17 |
aatcatgtggctattaaatcttttgagtgaacttggagtaccacatcaaacacctactcttttttgtgacaatattggcaccacttacttatgttccaat |
116 |
Q |
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| T |
34296155 |
aatcatgtggctattaaatcttttgagtgaacttggagtaccgcatcaaacacctactcttttttgtgacaatattggcaccacttacttatgttccaat |
34296254 |
T |
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| Q |
117 |
ccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaa |
216 |
Q |
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| T |
34296255 |
ccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaa |
34296354 |
T |
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| Q |
217 |
aggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagacaaaattggtgtcattgatggt |
302 |
Q |
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| T |
34296355 |
aggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagacaaaattggtgtcattgatggt |
34296440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 31347599 - 31347697
Alignment:
| Q |
68 |
acctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgt |
166 |
Q |
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| T |
31347599 |
acctacactattttgtgataatattggcacaacttacctatgttctaatctcgtatttcattcaagaatgaaacacattgccatggattatcactttgt |
31347697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 24485870 - 24485583
Alignment:
| Q |
17 |
aatcatgtggctattaaatcttttgagtgaacttggagtaccacatcaaacacctactcttttttgtgacaatattggcaccacttacttatgttccaat |
116 |
Q |
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| T |
24485870 |
aatcatgtggctattaaatcttttgagtgaacttggagtaccgcatcaaacacctactcttttttgtgacaatattggcaccacttacttatgttccaat |
24485771 |
T |
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| Q |
117 |
ccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaa |
216 |
Q |
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| T |
24485770 |
ccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagaaggttcaacttggtaaaattcgagtctcacatatatctacaa |
24485671 |
T |
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| Q |
217 |
aggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagac--aaaattggtgtcattgatggt |
302 |
Q |
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| T |
24485670 |
aggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagacaaaaaattggtgtcattgatggt |
24485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 24494204 - 24493935
Alignment:
| Q |
17 |
aatcatgtggctattaaatcttttgagtgaacttggagtaccacatcaaacacctactcttttttgtgacaatattggcaccacttacttatgttccaat |
116 |
Q |
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| T |
24494204 |
aatcatgtggctattaaatcttttgagtgaacttggagtaccgcatcaaacacctactcttttttgtgacaatattggcaccacttacttatgttccaat |
24494105 |
T |
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| Q |
117 |
ccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaa |
216 |
Q |
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| T |
24494104 |
ccggtatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagaaggttcaacttggtaaaattcgagtctcacatatatctacaa |
24494005 |
T |
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| Q |
217 |
aggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagacaaaat |
286 |
Q |
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| T |
24494004 |
aggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagacaaaat |
24493935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 58314 - 58037
Alignment:
| Q |
21 |
atgtggctattaaatcttttgagtgaacttggagtaccacatcaaacacctactcttttttgtgacaatattggcaccacttacttatgttccaatccgg |
120 |
Q |
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| T |
58314 |
atgtggctctcaaatcttttgggagaacttggtgttccatctcaaattcctacacttttttgcgacaatattggcacaacttatttatgctctaattcgg |
58215 |
T |
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| Q |
121 |
tatttcactctagaatgaagcatattgcacttgattatcattttgtgaggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaagga |
220 |
Q |
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| T |
58214 |
tctttcactcaagaatgaagcacattgcacttgattatcactttgtgaggcagcaagttcaaaatggaaaactcatagtctctcacatctcttcaaagaa |
58115 |
T |
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| Q |
221 |
tcaacttgcagacattttaacaaaacctctacatcgcaccagattttcaattctcagagacaaaattggtgtcattga |
298 |
Q |
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| T |
58114 |
tcaccttgcagacattctgactaagccattgcatcgcacaaggttttcacttctcagagacaaaataggtgtcattga |
58037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 7707475 - 7707534
Alignment:
| Q |
365 |
tttctgtctgccaaagttgttcgtgagcttcattctcctatgatttcttcgtaaaaatag |
424 |
Q |
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| T |
7707475 |
tttctgtctaccaaagttgttcgtaagcttcattctcctatgatttcttagtaaaaatag |
7707534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 38569621 - 38569673
Alignment:
| Q |
102 |
tacttatgttccaatccggtatttcactctagaatgaagcatattgcacttga |
154 |
Q |
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| T |
38569621 |
tacttatgctctaatccagtttttcactctcgaatgaagcatatcgcacttga |
38569673 |
T |
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