View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5871_low_16 (Length: 357)
Name: NF5871_low_16
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 41588168 - 41588495
Alignment:
| Q |
13 |
catcatcacttgcaactgcagcaccttgttcttctaacacattgactgtctcctcgccggattcaactttttctttcttcgccgatcgcgtaattcgctt |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588168 |
catcaccacttgcaactgcagcaccttgttcttctaacacattgactgtctcctcgccggattcaactttttctttcttcgccgatcgcgtaattcgctt |
41588267 |
T |
|
| Q |
113 |
aaaactcctcaccggaattgcaccatcaccattaccagttgcaactgcagcaccttgttgttctaacacggtcaatttatcctctccggattcaaccttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41588268 |
aaaactcctcaccggaattgcaccatcaccattaccagttgcaactgcagcaccttgttgttctaacacggtcaccttatcctctccggattcaaccttt |
41588367 |
T |
|
| Q |
213 |
tctttcatcgccgatcgagtaattcgcttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcaccttcacctcgctgttcta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588368 |
tctttcatcgccgatcgagtaattcgcttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcaccttcacctcgctgttcta |
41588467 |
T |
|
| Q |
313 |
acacagtaaccgtttcctcaccggtttc |
340 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41588468 |
acacagtaaccgtttcctcaccggtttc |
41588495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 297
Target Start/End: Original strand, 41588165 - 41588323
Alignment:
| Q |
139 |
caccattaccagttgcaactgcagcaccttgttgttctaacacggtcaatttatcctctccggattcaaccttttctttcatcgccgatcgagtaattcg |
238 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||||||||| | | | | ||||| ||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
41588165 |
caccatcaccacttgcaactgcagcaccttgttcttctaacacattgactgtctcctcgccggattcaactttttctttcttcgccgatcgcgtaattcg |
41588264 |
T |
|
| Q |
239 |
cttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcacctt |
297 |
Q |
| |
|
||| ||| || ||||||| | |||||||||| |||||| |||||| ||| |||||| |
|
|
| T |
41588265 |
cttaaaactcctcaccggaattgcaccatcaccattaccagttgcaactgcagcacctt |
41588323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University