View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_18 (Length: 332)
Name: NF5871_low_18
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 9123353 - 9123100
Alignment:
| Q |
1 |
aaaggatgagataatgggagttacagatttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttt |
100 |
Q |
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||||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123353 |
aaaggatgatattatgggagttacagatttgaatgaggagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttt |
9123254 |
T |
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| Q |
101 |
tatcgataggaatgattgcagctgattgtaatgcatgtattataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattt |
200 |
Q |
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||| ||||||||| ||||||||||||||||| || ||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9123253 |
tatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatataatgaaattt |
9123156 |
T |
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| Q |
201 |
tatccactcattattcctcaattacttgtctggtttatttatcactgccaacgtct |
256 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |
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| T |
9123155 |
tatccactcattattcctcaattgcttgtctggtttctttattactgccaacgtct |
9123100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 9131460 - 9131207
Alignment:
| Q |
1 |
aaaggatgagataatgggagttacagatttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttt |
100 |
Q |
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||||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131460 |
aaaggatgatattatgggagttacagatttgaatgaggagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttt |
9131361 |
T |
|
| Q |
101 |
tatcgataggaatgattgcagctgattgtaatgcatgtattataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattt |
200 |
Q |
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| T |
9131360 |
tatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatataatgaaattt |
9131263 |
T |
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| Q |
201 |
tatccactcattattcctcaattacttgtctggtttatttatcactgccaacgtct |
256 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |
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| T |
9131262 |
tatccactcattattcctcaattgcttgtctggtttctttattactgccaacgtct |
9131207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24525221 - 24524997
Alignment:
| Q |
1 |
aaaggatgagataatgggagttacagatttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttt |
100 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24525221 |
aaaggatgagattatgggagtgaatgatttgaatgaggagaagtttcttaacagagattgggaagatggagaaattatcattctcgattaattagctttt |
24525122 |
T |
|
| Q |
101 |
tatcgataggaatgattgcagctgattgtaatgcatgtatt---ataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaa |
197 |
Q |
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|||| |||||||||||| |||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525121 |
tatctttaggaatgattgtagctaattacaatgcatgtattatcataggaaggaact-tcatgtaagaaattatattcatattcaatatatataatgaaa |
24525023 |
T |
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| Q |
198 |
ttttatccactcattattcctcaatt |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24525022 |
ttttatccactcattattcctcaatt |
24524997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 24524967 - 24524921
Alignment:
| Q |
268 |
atatcaagtcactgcaactcatactatatagatggtcaattatcagttact |
318 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24524967 |
atatgaagtcactgcaactcata----atagatggtcaattatcagttact |
24524921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 9038978 - 9039096
Alignment:
| Q |
1 |
aaaggatgagataatgggagttacagatttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttt |
100 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9038978 |
aaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaacaga-attgggaagaaggagaaattatcattctcgattaattagttttt |
9039076 |
T |
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| Q |
101 |
tatcgataggaatgattgca |
120 |
Q |
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|||| ||||||||| |||| |
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| T |
9039077 |
tatctttaggaatgactgca |
9039096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 39815109 - 39815150
Alignment:
| Q |
62 |
gaagaaggagaaattatcattctcgattaattagctttttat |
103 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39815109 |
gaagaaggagaagttatcattctcgattaattagctttttat |
39815150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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