View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_19 (Length: 306)
Name: NF5871_low_19
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 9445952 - 9446150
Alignment:
| Q |
29 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaag |
128 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9445952 |
acccttggcttcatcactcaccttt-aagtccgaccactcttgagaagtgaacatggttctaattttttgttttaggttgtgaaacctttgcaattgaag |
9446050 |
T |
|
| Q |
129 |
aaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactg |
228 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9446051 |
aaagtttgttgc----cttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacggttatagatgaaactg |
9446146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 3071444 - 3071646
Alignment:
| Q |
29 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaag |
128 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3071444 |
acccttggcttcatcacccaccttt-aagtctgaccactcttgagaagtgaaaatggttctaattttttgttttaggttgtgcaacctttgcaattgaag |
3071542 |
T |
|
| Q |
129 |
aaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactg |
228 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
3071543 |
aaagtttgttgcaaaccttgtgactccatgtctaatcaactccatttcagctttctccctcaacagattcaaaaccaagtaatggttatagatgaaacta |
3071642 |
T |
|
| Q |
229 |
acaa |
232 |
Q |
| |
|
|||| |
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|
| T |
3071643 |
acaa |
3071646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 9446414 - 9446468
Alignment:
| Q |
242 |
gcaccatgacaccattcgttttacacattaatcttccgaagctttttccttcatc |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
9446414 |
gcaccatgacaccattcgttttacacattaatcttctgaagctttttccttcatc |
9446468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 24193812 - 24194010
Alignment:
| Q |
33 |
ttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaagaaag |
132 |
Q |
| |
|
|||||||| ||||| |||||| || || |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24193812 |
ttggcttcgtcactgacctttaaa-tccgaccactcttgagaagtgaacatggttataattttttgttttaggttgtgcaacatttgcaattgaagaaag |
24193910 |
T |
|
| Q |
133 |
tttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactgacaa |
232 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
24193911 |
tttgttgcaaaccttgtgactcaatgtctaatcaactcactttcagctttctccctcaacaaattcaaaaccaaagaatggttatagatgaaaccgacaa |
24194010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 24194709 - 24194507
Alignment:
| Q |
29 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaag |
128 |
Q |
| |
|
||||||| |||| |||||||||||| || || ||||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
24194709 |
acccttgacttcgtcactcacctttaaattc-gaccactgttgagaagtgaacatggttctaaatttttgttttaggttgtgcaacatttgcaattgaag |
24194611 |
T |
|
| Q |
129 |
aaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactg |
228 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| | |
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| T |
24194610 |
aaagtttgttgcaaaccttgtgactcaatgtctaatcaactcactttcagctttctccctcaacaaattcaaaaccaaagaatggttatagatgaaaccg |
24194511 |
T |
|
| Q |
229 |
acaa |
232 |
Q |
| |
|
|||| |
|
|
| T |
24194510 |
acaa |
24194507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 2947273 - 2947078
Alignment:
| Q |
29 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaaca-tgtttctaattttttgttttaggttgtgcaacctttgcaattgaa |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||| ||||| | |||||||||||||||||| |||||||| |||||||| |
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| T |
2947273 |
acccttggcttcatcactcaccttt-aagtccgaccattcttgaaaagtgaacaatgttttaatttttttgttttaggttgtacaaccttttcaattgaa |
2947175 |
T |
|
| Q |
128 |
gaaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaa |
224 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||| |
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| T |
2947174 |
gaaagtttgtggcaaaccttgtgactccatgtctaatcaactccatttcagctttctcccacaataaattcaaaaccaaagaatggttatagatgaa |
2947078 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 39164132 - 39164272
Alignment:
| Q |
70 |
tgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaagaaagtttgttgcaaaacttgtgactccatgtctaatcaact |
169 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||| |||||| |||||||||||||||||| |
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| T |
39164132 |
tgagaagtgaacatggttctaattttttattttaggttgtgcaac---------------aagtttgtggcaaaccttgtg-ctccatgtctaatcaact |
39164215 |
T |
|
| Q |
170 |
ccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaac |
226 |
Q |
| |
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| || ||| ||||||||||||||| ||||||||| ||||| |||||||||||||| |
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|
| T |
39164216 |
cgcttccagttttctccctcaacaaattcaaaacccaagaatggttatagatgaaac |
39164272 |
T |
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