View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_20 (Length: 294)
Name: NF5871_low_20
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 13079562 - 13079408
Alignment:
| Q |
13 |
aatatgagaagatacaaaatgaagtagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatag |
112 |
Q |
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| T |
13079562 |
aatatgagaagatacaaaatgaagtagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatag |
13079463 |
T |
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| Q |
113 |
atcaaaagaagattttccaatgaaaatgttagactcacaaggtgatacaacagag |
167 |
Q |
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| T |
13079462 |
atcaaaagaagattttccaatgaaaatgttagactcacaaggtgatacaacagag |
13079408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 13075355 - 13075207
Alignment:
| Q |
13 |
aatatgagaagatacaaaatgaagtagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatag |
112 |
Q |
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| T |
13075355 |
aatatgagaagatacaaaata---tagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatag |
13075259 |
T |
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| Q |
113 |
atcaaaagaagattttccaatgaaaatgttagactcacaaggtgatacaaca |
164 |
Q |
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| T |
13075258 |
atcaaaagaagattttccaatgaaaatgttagactcataaggtgatacaaca |
13075207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 13079349 - 13079296
Alignment:
| Q |
226 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagatta |
279 |
Q |
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| T |
13079349 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagagtgcaatgaagatta |
13079296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 13075145 - 13075092
Alignment:
| Q |
226 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagatta |
279 |
Q |
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| T |
13075145 |
ttgtaccatttgtgaagggagaaatttaagaacctaagatttcaatgaagatta |
13075092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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