View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871_low_21 (Length: 288)

Name: NF5871_low_21
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871_low_21
NF5871_low_21
[»] chr5 (13 HSPs)
chr5 (18-288)||(7164105-7164373)
chr5 (122-255)||(1145793-1145926)
chr5 (181-269)||(17644501-17644591)
chr5 (181-245)||(40266534-40266598)
chr5 (110-171)||(25759856-25759917)
chr5 (110-171)||(25787842-25787903)
chr5 (123-168)||(33037385-33037430)
chr5 (121-171)||(40266589-40266639)
chr5 (122-171)||(1145169-1145218)
chr5 (181-222)||(17344802-17344843)
chr5 (124-193)||(40266401-40266470)
chr5 (112-172)||(7826128-7826188)
chr5 (192-224)||(36580302-36580334)
[»] chr7 (10 HSPs)
chr7 (176-242)||(149036-149102)
chr7 (89-195)||(26009368-26009470)
chr7 (110-216)||(23345002-23345108)
chr7 (181-242)||(28139384-28139445)
chr7 (90-149)||(28138759-28138814)
chr7 (125-171)||(28139436-28139482)
chr7 (181-222)||(16984391-16984432)
chr7 (181-242)||(18146190-18146251)
chr7 (110-155)||(25428747-25428792)
chr7 (181-221)||(19931954-19931994)
[»] chr3 (7 HSPs)
chr3 (122-198)||(35105960-35106031)
chr3 (121-222)||(2652368-2652469)
chr3 (122-198)||(50663903-50663979)
chr3 (110-170)||(8150185-8150245)
chr3 (181-216)||(26998262-26998297)
chr3 (121-171)||(40517001-40517051)
chr3 (181-222)||(3540183-3540224)
[»] chr2 (5 HSPs)
chr2 (121-240)||(9539010-9539129)
chr2 (90-171)||(12965049-12965126)
chr2 (181-216)||(28360093-28360128)
chr2 (181-256)||(12965117-12965197)
chr2 (181-241)||(41101215-41101275)
[»] chr1 (7 HSPs)
chr1 (174-224)||(5603128-5603178)
chr1 (181-222)||(10884458-10884499)
chr1 (181-222)||(42883723-42883764)
chr1 (121-197)||(5602971-5603047)
chr1 (122-201)||(9862863-9862942)
chr1 (208-281)||(4329008-4329081)
chr1 (181-221)||(13280754-13280794)
[»] chr6 (5 HSPs)
chr6 (189-250)||(807124-807185)
chr6 (122-167)||(14830420-14830465)
chr6 (122-168)||(31522539-31522585)
chr6 (122-167)||(17436546-17436591)
chr6 (121-149)||(14153381-14153409)
[»] chr8 (6 HSPs)
chr8 (124-197)||(3588370-3588443)
chr8 (121-171)||(3588546-3588596)
chr8 (110-171)||(1349063-1349124)
chr8 (181-245)||(3588493-3588555)
chr8 (181-242)||(32035816-32035877)
chr8 (174-242)||(15908953-15909021)
[»] chr4 (2 HSPs)
chr4 (121-157)||(24974161-24974197)
chr4 (181-245)||(37999472-37999536)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 7164105 - 7164373
Alignment:
Q  18 aatatggttctatacataaatccagaattaggcccaaatatttagtccaaatcaccttagttaatagtccacgaattctgctctttacccaaccaaacgt 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||    
T  7164105 aatatggttctatacataaatccagatttaggcccaaatatttagtccaaatcaccttagttaatagtccacgaattctgctctttacctaa----acgt 7164200  T
Q  118 ttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaat 217  Q
    ||||||||||||| ||||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  7164201 ttctgctcattcctaaagtaaatgaccaaaatgcctctacatgagttaactcacgttgcatggattaactcacgctaatgttaaatttgcatgagttaat 7164300  T
Q  218 tcacgttgtgtgacttaagtcacgcagaaaaa--acacactaaaatccaacgtgtgttaactcacgtttgatt 288  Q
    |||||  | |||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||    
T  7164301 tcacgccgcgtgacttaagtcacgcagaaaaaacacacactaaaacccaacgtgagttaactcacgtttgatt 7164373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 1145926 - 1145793
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattcac 221  Q
    ||||||||||||||||||||| ||||||| || ||||| |||||||| ||  | |||  |||||||||||||| ||| ||||||||||||||||| ||||    
T  1145926 gctcattcccaaagtaaatgatcaaaatgcccttacatgagttaacttacgctacattagttaactcacgctaatgtaaaatttgcatgagttaactcac 1145827  T
Q  222 gttgtgtgacttaagtcacgcagaaaaaacacac 255  Q
    | || ||| |||||||||||||||||||| ||||    
T  1145826 gctgcgtgtcttaagtcacgcagaaaaaatacac 1145793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 17644591 - 17644501
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcagaaaaa--acacactaaaatccaacgtg 269  Q
    ||||||||||||||||||||||||| |||||||||| ||||| || ||||||||| |||||||||||||  ||||||||||| || |||||    
T  17644591 gttaactcacgctagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgcagaaaaatcacacactaaaacccgacgtg 17644501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 40266598 - 40266534
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 245  Q
    |||||||||||||| |||||||||||| |||||||| ||||| |  |||||||||||||||||||    
T  40266598 gttaactcacgctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcacgcaga 40266534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 25759856 - 25759917
Alignment:
Q  110 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    |||||||  |||||||||||| ||||||||||||||||||||| || | | |||||||||||    
T  25759856 ccaaacggatctgctcattcctaaagtaaatgaccaaaatgtctctgcgtgagttaactcac 25759917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 25787903 - 25787842
Alignment:
Q  110 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    ||||||| || |||||||| ||||| ||||||||||||||| |||| ||| |||||||||||    
T  25787903 ccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcac 25787842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 33037430 - 33037385
Alignment:
Q  123 ctcattcccaaagtaaatgaccaaaatgtccctacataagttaact 168  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||    
T  33037430 ctcattcccaaagtaaatgaccaaaatgcccctacacatgttaact 33037385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 40266639 - 40266589
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    |||||||||||||||||||||||||||||| || | | | |||||||||||    
T  40266639 tgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcac 40266589  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 1145169 - 1145218
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    ||||||||||||||||||||||||||||| | ||||  | ||||||||||    
T  1145169 gctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaactcac 1145218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 17344843 - 17344802
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacg 222  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  17344843 gttaactcacgctagtgttaattttgcgtgagttaactcacg 17344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 40266401 - 40266470
Alignment:
Q  124 tcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgct 193  Q
    ||||||||||||||||||||||||||| || | | | ||||||||| |   ||||| |||||||||||||    
T  40266401 tcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcccgcagcatgagttaactcacgct 40266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 7826188 - 7826128
Alignment:
Q  112 aaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcaca 172  Q
    |||||||| ||||||||||||||| || | ||||||||  |||||| || |||||||||||    
T  7826188 aaacgtttttgctcattcccaaagaaatttaccaaaatacccctacgtatgttaactcaca 7826128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 36580302 - 36580334
Alignment:
Q  192 ctagtgttaaatttgcatgagttaattcacgtt 224  Q
    ||||||||||||||||||||||||| |||||||    
T  36580302 ctagtgttaaatttgcatgagttaactcacgtt 36580334  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 149036 - 149102
Alignment:
Q  176 catgggttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 242  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||  |||||||||||||||    
T  149036 catgagttaactcacgctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcacgc 149102  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 26009368 - 26009470
Alignment:
Q  89 cgaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactc 188  Q
    |||||||||||||||||||||    ||| || ||||||||||||||||||||||||||||| | |||||  | |||||||||| | || || || |||||    
T  26009368 cgaattctgctctttacccaa----acgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactcacgtagcgtgagtcaactc 26009463  T
Q  189 acgctag 195  Q
    |||||||    
T  26009464 acgctag 26009470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 23345108 - 23345002
Alignment:
Q  110 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcat 209  Q
    ||||||| || |||||||||||||| ||||||  || | || || | | |||||||||||||  |||||| |||||||||| |||||||||||||||| |    
T  23345108 ccaaacgattttgctcattcccaaaataaatgttcatattgcccatgcgtaagttaactcacgctgcatgagttaactcacactagtgttaaatttgcgt 23345009  T
Q  210 gagttaa 216  Q
    || ||||    
T  23345008 gaattaa 23345002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 28139445 - 28139384
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 242  Q
    |||||||||||||||||||||||||||||||||||| | ||| || |||| |||| ||||||    
T  28139445 gttaactcacgctagtgttaaatttgcatgagttaagttacgctgcgtgagttaactcacgc 28139384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 28138759 - 28138814
Alignment:
Q  90 gaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaat 149  Q
    ||||||||||||||||||||    | | || |||||||||||||||||||||||||||||    
T  28138759 gaattctgctctttacccaa----atgattttgctcattcccaaagtaaatgaccaaaat 28138814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 28139482 - 28139436
Alignment:
Q  125 cattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    |||||||||||||||||||||||||| |||| | | |||||||||||    
T  28139482 cattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcac 28139436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 16984391 - 16984432
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacg 222  Q
    ||||||||||||||||||||||| ||| |||||||| |||||    
T  16984391 gttaactcacgctagtgttaaatatgcgtgagttaactcacg 16984432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 18146190 - 18146251
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 242  Q
    ||||||||| ||||||||||||||||  || ||||| |||||||| | || |||||||||||    
T  18146190 gttaactcatgctagtgttaaatttgtgtgggttaagtcacgttgcgagagttaagtcacgc 18146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 25428747 - 25428792
Alignment:
Q  110 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccct 155  Q
    ||||||| |||||||||||||||||||||||  |||||||| ||||    
T  25428747 ccaaacggttctgctcattcccaaagtaaatatccaaaatgcccct 25428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 19931994 - 19931954
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcac 221  Q
    ||||| ||||||||||||||||||||||||| |||| ||||    
T  19931994 gttaagtcacgctagtgttaaatttgcatgacttaactcac 19931954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 35106031 - 35105960
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgt 198  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||     ||| || ||||||||||||||||||    
T  35106031 gctcattcccaaagtaaatgaccaaaatgtcactacatgagttaact-----tgcgtgagttaactcacgctagtgt 35105960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 2652368 - 2652469
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattca 220  Q
    ||||| || |||||||||||| | | | || |||||| ||||||||||  |  ||| || ||||||||||||||||||||||||||||||| |||| |||    
T  2652368 tgctcgtttccaaagtaaatgtctatattgcccctacgtaagttaacttgcgctgcgtgagttaactcacgctagtgttaaatttgcatgacttaactca 2652467  T
Q  221 cg 222  Q
    ||    
T  2652468 cg 2652469  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 50663903 - 50663979
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgt 198  Q
    ||||||||||||||||||| ||||||||| ||||||  | |||||||||| | || || ||||||||| ||||||||    
T  50663903 gctcattcccaaagtaaataaccaaaatgcccctacgcatgttaactcacgtagcgtgagttaactcaagctagtgt 50663979  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 8150185 - 8150245
Alignment:
Q  110 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactca 170  Q
    |||||||||| ||||||||||||||| || ||||||||||  |||||| || |||||||||    
T  8150185 ccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactca 8150245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 26998297 - 26998262
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaa 216  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26998297 gttaactcacgctagtgttaaatttacatgagttaa 26998262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 40517001 - 40517051
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||| ||||    
T  40517001 tgctcattcctaaagtaaatgatcaaaatgtctctacgtaagttaagtcac 40517051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 3540224 - 3540183
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacg 222  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  3540224 gttaagtcacgctagtgttaaatttgcatgacttaactcacg 3540183  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 9539129 - 9539010
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattca 220  Q
    |||||||||||||||||||||  || | || |||| ||||||||||||  |||||  || |||||  ||||||||||||||||||||||||  | | |||    
T  9539129 tgctcattcccaaagtaaatgttcatattgcccctgcataagttaacttgcattgtgtgagttaaaacacgctagtgttaaatttgcatgacgtgactca 9539030  T
Q  221 cgttgtgtgacttaagtcac 240  Q
    ||| | |||| |||||||||    
T  9539029 cgtagcgtgagttaagtcac 9539010  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 12965049 - 12965126
Alignment:
Q  90 gaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    ||||||||||||||||||||    |||||||||||||||  |||||||||||| |||||||  ||||| | |||||||||||    
T  12965049 gaattctgctctttacccaa----acgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcac 12965126  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 28360093 - 28360128
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaa 216  Q
    ||||||||||||||||||||||||||| ||||||||    
T  28360093 gttaactcacgctagtgttaaatttgcgtgagttaa 28360128  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 12965117 - 12965197
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtg-----acttaagtcacgcagaaaaaacacact 256  Q
    |||||||||||||| |||||||||| |  ||||||| ||||| || |||     ||||||||||||||| |||||||||||    
T  12965117 gttaactcacgctaatgttaaatttacgagagttaactcacgctgcgtgagataacttaagtcacgcaggaaaaacacact 12965197  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 41101215 - 41101275
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacg 241  Q
    ||||||||||||||||||||||| | | ||| |||| |||||||| |||| |||| |||||    
T  41101215 gttaactcacgctagtgttaaatctccgtgacttaactcacgttgcgtgagttaactcacg 41101275  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 5603178 - 5603128
Alignment:
Q  174 tgcatgggttaactcacgctagtgttaaatttgcatgagttaattcacgtt 224  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  5603178 tgcatgagttaactcacgctagtgttaaatttgcgtgagttaactcacgtt 5603128  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 10884499 - 10884458
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacg 222  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  10884499 gttaactcacgctagtgttaaatttgcgtgagttaactcacg 10884458  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 42883764 - 42883723
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacg 222  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  42883764 gttaactcacgcaagtgttaaatttgcatgagttaactcacg 42883723  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 5602971 - 5603047
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtg 197  Q
    |||||||||||||||||||||||||||||| ||||   | ||||||||| |   | ||| |||||||||||||||||    
T  5602971 tgctcattcccaaagtaaatgaccaaaatgcccctgtgtgagttaactcccgcagtatgagttaactcacgctagtg 5603047  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 9862942 - 9862863
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaa 201  Q
    ||||||||||||| |||||| | ||||||||| ||| ||| |||| |||| ||   || |||||||||||||||||||||    
T  9862942 gctcattcccaaaataaatgtctaaaatgtccttacgtaacttaagtcacgttatgtgagttaactcacgctagtgttaa 9862863  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 4329081 - 4329008
Alignment:
Q  208 atgagttaattcacgttgtgtgacttaagtcacgcagaaaaaacacactaaaatccaacgtgtgttaactcacg 281  Q
    |||| |||| ||||| || ||||||||| | ||| |||||| ||||||||||| ||| |||| |||||||||||    
T  4329081 atgaattaactcacgctgcgtgacttaaattacgaagaaaacacacactaaaacccagcgtgagttaactcacg 4329008  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 13280754 - 13280794
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcac 221  Q
    ||||||||||||||||||||||| ||| ||| |||||||||    
T  13280754 gttaactcacgctagtgttaaatatgcgtgacttaattcac 13280794  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 807185 - 807124
Alignment:
Q  189 acgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcagaaaaaa 250  Q
    ||||||||||||||||||| |||||||| ||||  || ||||||||||||||||| ||||||    
T  807185 acgctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcacgcaaaaaaaa 807124  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 14830420 - 14830465
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaac 167  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||    
T  14830420 gctcattcccaaagtaaatgtccaaaatgtccctacacatgttaac 14830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 31522585 - 31522539
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaact 168  Q
    ||||||||||||||||||||||| ||||| ||||||  |||||||||    
T  31522585 gctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaact 31522539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 17436591 - 17436546
Alignment:
Q  122 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaac 167  Q
    |||| |||||||||||||||||| ||||||||||||| | ||||||    
T  17436591 gctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaac 17436546  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 14153381 - 14153409
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaat 149  Q
    |||||||||||||||||||||||||||||    
T  14153381 tgctcattcccaaagtaaatgaccaaaat 14153409  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 3588370 - 3588443
Alignment:
Q  124 tcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtg 197  Q
    |||||| |||||||||||||||||||  ||||| || ||||||||| | | ||||| |||||||| ||||||||    
T  3588370 tcattctcaaagtaaatgaccaaaataaccctatatgagttaactcccgtagcatgagttaactcccgctagtg 3588443  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 3588596 - 3588546
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    |||||||||||||| ||||||||||||||| |||| | | |||||||||||    
T  3588596 tgctcattcccaaattaaatgaccaaaatgcccctgcgtgagttaactcac 3588546  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 1349063 - 1349124
Alignment:
Q  110 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 171  Q
    ||||| |||| |||||||||||||   ||||||||||||||||||| | | |||||||||||    
T  1349063 ccaaaagtttttgctcattcccaagtgaaatgaccaaaatgtccctgcgtgagttaactcac 1349124  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 3588555 - 3588493
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 245  Q
    ||||||||||||||||||||||||||  |||||||| ||||| |  |||| | ||||||||||||    
T  3588555 gttaactcacgctagtgttaaatttg--tgagttaactcacgctacgtgagtcaagtcacgcaga 3588493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 32035816 - 32035877
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 242  Q
    |||||||||||||||||||||| ||| |||| ||||| |||| || |||| |||| ||||||    
T  32035816 gttaactcacgctagtgttaaaattgtatgacttaatccacgctgcgtgagttaactcacgc 32035877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 15908953 - 15909021
Alignment:
Q  174 tgcatgggttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 242  Q
    |||||| ||||||||| |||||| |||| |||   ||||||||  |||||||||||| |||||||||||    
T  15908953 tgcatgagttaactcatgctagtattaattttaagtgagttaacacacgttgtgtgagttaagtcacgc 15909021  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 24974197 - 24974161
Alignment:
Q  121 tgctcattcccaaagtaaatgaccaaaatgtccctac 157  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  24974197 tgctcattcccaaagtaaatgaccgaaatgcccctac 24974161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 37999536 - 37999472
Alignment:
Q  181 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 245  Q
    |||||||||||||||||||||||  || ||| |||||||||| || |||| |||| ||| |||||    
T  37999536 gttaactcacgctagtgttaaatcagcgtgacttaattcacgctgcgtgagttaactcatgcaga 37999472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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