View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_24 (Length: 257)
Name: NF5871_low_24
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 36598000 - 36598206
Alignment:
| Q |
32 |
ttttaaatatcattgaatcaatgaacgtatagactttcttnnnnnnnnnntgaaagtacagaccgttagaggtatagtggagtaagttgattgattataa |
131 |
Q |
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| T |
36598000 |
ttttaaatatcattgaatcaatgaacgtatagacttt---aaaaaaaaaatgaacgtatagaccgttagaggtatagtggagcaagttgattgattataa |
36598096 |
T |
|
| Q |
132 |
taatttgatatataattagacggataaattctgttaagaaaattgcaagttatagttatgaagatttcgaggatcatgtttggcaaactaaagaaatagt |
231 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
36598097 |
taatttgatatataattagacggataaattatgttaagaaaattgcaagttacagttatgaagatttcgaggattatgtttggcaaactaaagaaataat |
36598196 |
T |
|
| Q |
232 |
atgcacttgt |
241 |
Q |
| |
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|||||||||| |
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|
| T |
36598197 |
atgcacttgt |
36598206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 14920131 - 14920298
Alignment:
| Q |
28 |
ttatttttaaatatcattgaatcaatgaacgtatagactttcttnnnnnnnnnntgaaagtacagaccgttagaggtatagtggagtaagttgattgatt |
127 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| ||||| | ||| ||| |||||||||||||||||||| || ||||||||||||| |
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| T |
14920131 |
ttatttttaaatatcattgaatcaatggacgtataaacttt--taaaaaaaaaaagaacgtatagaccgttagaggtatagtgcagcaagttgattgatt |
14920228 |
T |
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| Q |
128 |
ataataatttgatatataattagacggataaattctgttaagaaaattgcaagttatagttatgaagatt |
197 |
Q |
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| T |
14920229 |
ataataattggatatataattagacggataaattctgtaaagaaaattgcaagttacggttaagaagatt |
14920298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 14920324 - 14920364
Alignment:
| Q |
201 |
aggatcatgtttggcaaactaaagaaatagtatgcacttgt |
241 |
Q |
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| T |
14920324 |
aggattatgtttggcaaacaaaagaaataatatgcacttgt |
14920364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 42366598 - 42366388
Alignment:
| Q |
32 |
ttttaaatatcattgaatcaatgaacgtatagactttcttnnnnnnnnnn-tgaaagtacagaccgttagaggtatagtggagtaagttgattgattata |
130 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| |||| ||| ||||||||||||||||| || || |||||||||||||||| |
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| T |
42366598 |
ttttaaatatcattgaatcaatgaacatataaactttcttaaaaaaaaaaatgaacgtatagaccgttagaggtataatgcagcaagttgattgattata |
42366499 |
T |
|
| Q |
131 |
ataatttgatatataattagacggataaattctgttaagaaaattgcaagttatagttatgaagatttcgaggatcatgtttggcaaactaaagaaatag |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
42366498 |
ataatttgatatataattagacggataaattctgttaagaaaattgcaagttacagctatgaagatttcaaggatcatgtttggcaaacaaaagaaataa |
42366399 |
T |
|
| Q |
231 |
tatgcacttgt |
241 |
Q |
| |
|
||||||||||| |
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|
| T |
42366398 |
tatgcacttgt |
42366388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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