View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_25 (Length: 256)
Name: NF5871_low_25
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_25 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 11405318 - 11405559
Alignment:
| Q |
15 |
aatatcaatggtacacaatctaatgtattatacacatctatcaaatttaataacttttaaatttctaatcaaagaacttttttaaaatatcggattttat |
114 |
Q |
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| T |
11405318 |
aatatcaatggtacacaatctaatgtattatacacacttatcaaatttaataatttttaaatttctaatcaaagaacttttttaaaatatcggattttat |
11405417 |
T |
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| Q |
115 |
ttggttaggataaaattctatatgacaaaagtacattactgnnnnnnnnaccatcagatttgttatgctatagaaaccacaaacttcaactacttccaat |
214 |
Q |
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| T |
11405418 |
ttggatatgataagattctatatgacaaaagtacattactgttttttttaccatcagatttgttatgctatagaaaccacaaacttcaactactttcaat |
11405517 |
T |
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| Q |
215 |
ttcacttcctccagtgtaatttcgtccaaaaacattaccatg |
256 |
Q |
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| T |
11405518 |
ttcacttcctctagtgtaatttcgtccaaaaacattaccatg |
11405559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 17024496 - 17024739
Alignment:
| Q |
15 |
aatatcaatggtacacaatctaatgtattatacacatctatcaaatttaataacttttaaatttctaatcaaagaacttttttaaaatatcggattttat |
114 |
Q |
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| T |
17024496 |
aatatcaatggtacacaatctaatgtatcatacacagttatcaaatttaatcacttttaaatttataatcaaataactttttaaaaatatcggatttaat |
17024595 |
T |
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| Q |
115 |
ttggttaggataaaattctatatgacaaaagtacattac-tgnnnnnnnnaccatcagatttgttatgctatagaaaccacaaacttcaactacttccaa |
213 |
Q |
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| T |
17024596 |
ttggataggataagattctatatgacaaaagtacattacaatatttttttaccatcagcttttttatgctatagaaaccacaaacttcaactacttccaa |
17024695 |
T |
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| Q |
214 |
tttcacttc-ctccagtgtaatttcgtccaaaaacattaccatg |
256 |
Q |
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| T |
17024696 |
tttcaattcaatccattgtaatttattccaaaaacattaccatg |
17024739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 115493 - 115360
Alignment:
| Q |
19 |
tcaatggtacacaatctaatgtattatacacatctatcaaatttaataacttttaaatttctaatcaaagaacttttttaaaatatcggattttatttgg |
118 |
Q |
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| T |
115493 |
tcaatggtacacaatctaatgtatcatacacacctatcaaatttaataactttttaatttctaatcaaataac-tttttaaaatatgggatttaatttgg |
115395 |
T |
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| Q |
119 |
ttaggataaaattctatatgacaaaagtacattac |
153 |
Q |
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| T |
115394 |
ataggataagattctatatgaaaaaagtacattac |
115360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 115347 - 115284
Alignment:
| Q |
192 |
cacaaacttcaactacttccaatttcacttc-ctccagtgtaatttcgtccaaaaacattacca |
254 |
Q |
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| T |
115347 |
cacaaacttcaactacttccaatttcaattcaatccattgtattttattccaaaaacattacca |
115284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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