View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_27 (Length: 254)
Name: NF5871_low_27
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 26765308 - 26765529
Alignment:
| Q |
17 |
taatggttctgttttgtacatttcatatggaagttatctatccgtttcaagaacacaaatggatgaaattgcatctgcattgcatgatagtggtgttcga |
116 |
Q |
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| T |
26765308 |
taatggttctgttttgtacatttcatatggaagttatctatcggtttcaagaacacaaatggatgatattgcagctgcattgcacgatagtggtgttcgg |
26765407 |
T |
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| Q |
117 |
ttcttgtgggtaacacgagacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagagtattgtcac |
216 |
Q |
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| T |
26765408 |
ttcttgtgggtaacgcgtgacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgccatggtgtgaccaattgacggtattgtcac |
26765507 |
T |
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| Q |
217 |
atccttctgtaggtggttattg |
238 |
Q |
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| T |
26765508 |
atccttctataggtggttattg |
26765529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 26785412 - 26785631
Alignment:
| Q |
19 |
atggttctgttttgtacatttcatatggaagttatctatccgtttcaagaacacaaatggatgaaattgcatctgcattgcatgatagtggtgttcgatt |
118 |
Q |
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| T |
26785412 |
atggttccgttttgtacatttcatatggcagttatctatcggtttcaagaacacaaatggatgaaattgcagctgcattgcaggatagtggtgttcggtt |
26785511 |
T |
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| Q |
119 |
cttgtgggtaacacgagacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagagtattgtcacat |
218 |
Q |
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| T |
26785512 |
cttgtgggtagcgcgcgacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagggtattgttacat |
26785611 |
T |
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| Q |
219 |
ccttctgtaggtggttattg |
238 |
Q |
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| T |
26785612 |
ccttctataggtggttattg |
26785631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 32075170 - 32075134
Alignment:
| Q |
188 |
atggtgtgaccaattgagagtattgtcacatccttct |
224 |
Q |
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| T |
32075170 |
atggtgtgaccaattgagagttttgtcacatccttct |
32075134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 31010461 - 31010517
Alignment:
| Q |
152 |
gaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagagt |
208 |
Q |
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| T |
31010461 |
gaaagatatttgtggggaaaaagggtttgttttgccatggtgtgaccaattgagagt |
31010517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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