View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_28 (Length: 252)
Name: NF5871_low_28
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 35037216 - 35037438
Alignment:
| Q |
13 |
aaaatctaatattaattatgatctcattattttcaaatagtctaatatatttagtgattaaatattcgttgttgtaatagactatttaataatcttgtaa |
112 |
Q |
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| T |
35037216 |
aaaatctaatattaattatgatctcattattttcaaatagtctaatatatttagcgattaaatattcgttgttgtaatagactattgaataatcgtgtaa |
35037315 |
T |
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| Q |
113 |
acnnnnnnnnnngactatttaatgatcgtatatatacaaatctataatagaaat-----ggatgaagaattgagtaatacattggttttatattagattg |
207 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35037316 |
acaaaaaaaaaagactatttaatgatcgtatatatacaaatctataatagaaattaaatggatgaagaattgagtaatacattggttttatattagattg |
35037415 |
T |
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| Q |
208 |
gttttagattgtgcatgcatgtt |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
35037416 |
gttttagattgtgcatgcatgtt |
35037438 |
T |
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