View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871_low_34 (Length: 243)

Name: NF5871_low_34
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871_low_34
NF5871_low_34
[»] chr4 (2 HSPs)
chr4 (32-225)||(11991118-11991310)
chr4 (177-225)||(639561-639609)
[»] chr5 (3 HSPs)
chr5 (32-225)||(14275302-14275495)
chr5 (91-220)||(37803007-37803136)
chr5 (93-223)||(37626469-37626599)
[»] scaffold2006 (1 HSPs)
scaffold2006 (91-220)||(810-939)
[»] chr1 (2 HSPs)
chr1 (91-220)||(41313007-41313136)
chr1 (96-188)||(25218316-25218409)
[»] chr7 (6 HSPs)
chr7 (121-220)||(2188797-2188897)
chr7 (122-220)||(19632010-19632109)
chr7 (96-187)||(2582790-2582883)
chr7 (96-179)||(10296076-10296160)
chr7 (90-153)||(2566441-2566505)
chr7 (122-166)||(48185741-48185785)
[»] chr2 (1 HSPs)
chr2 (91-220)||(19216444-19216572)
[»] chr8 (1 HSPs)
chr8 (121-220)||(29823566-29823666)
[»] chr3 (1 HSPs)
chr3 (106-198)||(5187238-5187330)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 11991118 - 11991310
Alignment:
Q  32 tatacatttcttagtgaaaaagatgaataattannnnnnnncttataaataataggagaaactgaaaactcatagacttcaaaatacacgaataaatagg 131  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||    
T  11991118 tatacatttcttagtgaaaaagatgaataattattttttt-cttataaataataggagaaactgaaaactcataggcttcaaaatacatgaataaacagg 11991216  T
Q  132 tttctcttaaattttcaaaatagtaaattaaagttgttttacatcaaatataaaattcctaagaacaaggctttcggtcttttactacctaagt 225  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  11991217 tttctcttaaattttcaaaatagtaaatcagagttgttttacatcaaatataaaattcctaagaacaaggctttcgaccttttactacccaagt 11991310  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 639609 - 639561
Alignment:
Q  177 aaatataaaattcctaagaacaaggctttcggtcttttactacctaagt 225  Q
    ||||||||||||||||| |||||||||||| | |||| |||||| ||||    
T  639609 aaatataaaattcctaaaaacaaggctttcagactttcactacccaagt 639561  T

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Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 14275302 - 14275495
Alignment:
Q  32 tatacatttcttagtgaaaaagatgaataattannnnnnnncttataaataataggagaaactgaaaactcatagacttcaaaatacacgaataaatagg 131  Q
    |||| |||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  14275302 tatatatttcttagtgaaaaagatgaatatttttttttcttcttataaataataggagaaactgaaaactcataggcttcaaaatacacgaataaacagg 14275401  T
Q  132 tttctcttaaattttcaaaatagtaaattaaagttgttttacatcaaatataaaattcctaagaacaaggctttcggtcttttactacctaagt 225  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  14275402 tttctcttaaattttcaaaatagtaaatcagagttgttttacatcaaatataaaattcctaagaacaaggctttcagccttttactacccaagt 14275495  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 37803007 - 37803136
Alignment:
Q  91 aactgaaaactcatagacttcaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattc 189  Q
    |||||||||||||| |||||||||| |   ||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||    
T  37803007 aactgaaaactcattgacttcaaaaaatt-gaataaataagtttctcttgaattttcagaatagtaaattagagttgttttacatcaaaatataaaattc 37803105  T
Q  190 ctaagaacaaggctttcggtcttttactacc 220  Q
    |||| |||||||||||| | |||| ||||||    
T  37803106 ctaacaacaaggctttccgcctttcactacc 37803136  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 37626469 - 37626599
Alignment:
Q  93 ctgaaaactcatagacttcaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattcct 191  Q
    |||||||||||| |||||||||| |   ||||||||| ||||||||| |||||||| |||||||||| | |||||||||||||| |||||||||||||||    
T  37626469 ctgaaaactcattgacttcaaaaaatt-gaataaataagtttctcttgaattttcagaatagtaaatcagagttgttttacatcaaaatataaaattcct 37626567  T
Q  192 aagaacaaggctttcggtcttttactacctaa 223  Q
    || |||||||||||| | |||| |||||||||    
T  37626568 aacaacaaggctttccgcctttcactacctaa 37626599  T

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Target: scaffold2006 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold2006
Description:

Target: scaffold2006; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 810 - 939
Alignment:
Q  91 aactgaaaactcatagacttcaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattc 189  Q
    |||||||||||||| |||||||||| |   ||||||||| ||||||||| |||||||| |||||||||| | |||||||||||||| |||||||||||||    
T  810 aactgaaaactcattgacttcaaaaaatt-gaataaataagtttctcttgaattttcagaatagtaaataagagttgttttacatcaaaatataaaattc 908  T
Q  190 ctaagaacaaggctttcggtcttttactacc 220  Q
    |||| |||||||||||| | |||| ||||||    
T  909 ctaacaacaaggctttccgcctttcactacc 939  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 41313007 - 41313136
Alignment:
Q  91 aactgaaaactcatagacttcaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattc 189  Q
    ||||||||||| || |||||||||| |   ||||||||| ||||||||| |||||||| |||||||||| | |||||||||||||| |||||||||||||    
T  41313007 aactgaaaactaattgacttcaaaaaatt-gaataaataagtttctcttgaattttcagaatagtaaatcagagttgttttacatcaaaatataaaattc 41313105  T
Q  190 ctaagaacaaggctttcggtcttttactacc 220  Q
    ||||||||||||||||| | |||| ||||||    
T  41313106 ctaagaacaaggctttccgcctttcactacc 41313136  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 25218409 - 25218316
Alignment:
Q  96 aaaactcatagacttcaaaatacacgaataaataggtttctctta-aattttcaaaatagtaaattaaagttgttttacatcaaatataaaatt 188  Q
    ||||||| | ||||| |||||| ||  ||||||| |||||||||  ||||||||||||||||||||| |||||| |||||||||| ||| ||||    
T  25218409 aaaactcgtcgactttaaaatagacccataaataagtttctctttgaattttcaaaatagtaaattagagttgtcttacatcaaaaatataatt 25218316  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 2188897 - 2188797
Alignment:
Q  121 gaataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattcctaagaacaaggctttcggtcttttactac 219  Q
    ||||||||| ||||||||| |||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||    
T  2188897 gaataaataagtttctcttgaattttcagaataggaaatcaaagttgttttacatcaaaatataaaattcctaagaacaaggctttccgcctttcactac 2188798  T
Q  220 c 220  Q
    |    
T  2188797 c 2188797  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 19632010 - 19632109
Alignment:
Q  122 aataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatcaaa-tataaaattcctaagaacaaggctttcggtcttttactacc 220  Q
    |||||||| ||||||||| ||| |||| ||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||    
T  19632010 aataaataagtttctcttgaatcttcagaatagtagatcagagttgttttacatcaaaatataaaattcctaagaacaaggctttccgcctttcactacc 19632109  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 2582883 - 2582790
Alignment:
Q  96 aaaactcatagacttcaaaatacacgaataaataggtttctctt-aaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaat 187  Q
    ||||||||| ||||| ||| ||||| |||||||| ||||||||| |||||||||||||| || || | || ||| ||||||| |||||||||||    
T  2582883 aaaactcattgactttaaattacacaaataaataagtttctctttaaattttcaaaatattagatcagaggtgtcttacatcaaaatataaaat 2582790  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 10296160 - 10296076
Alignment:
Q  96 aaaactcatagacttcaaaatacacgaataaataggtttctctt-aaattttcaaaatagtaaattaaagttgttttacatcaaa 179  Q
    ||||||||| ||||| ||| ||||| |||||||| ||||||||| |||||||||||||| || |||| |  ||| ||||||||||    
T  10296160 aaaactcattgactttaaattacacaaataaataagtttctctttaaattttcaaaatattagattagatgtgtcttacatcaaa 10296076  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 2566505 - 2566441
Alignment:
Q  90 aaactgaaaactcatagacttcaaaatacacgaataaataggtttctctt-aaattttcaaaata 153  Q
    ||||| ||||||||| ||||| ||| ||||| |||||||| |||||| || ||||||||||||||    
T  2566505 aaacttaaaactcattgactttaaattacacaaataaataagtttctgtttaaattttcaaaata 2566441  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 48185741 - 48185785
Alignment:
Q  122 aataaataggtttctcttaaattttcaaaatagtaaattaaagtt 166  Q
    ||||||||  |||||||||||||||||||| ||||||||| ||||    
T  48185741 aataaataaatttctcttaaattttcaaaacagtaaattagagtt 48185785  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 19216572 - 19216444
Alignment:
Q  91 aactgaaaactcatagacttcaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattc 189  Q
    |||||||||||||| |||||||||| |   ||||||||| ||||||||| |||||||| |||||||||| | |||||||||||||| ||||||||||||     
T  19216572 aactgaaaactcattgacttcaaaaaatt-gaataaataagtttctcttgaattttcagaatagtaaatcagagttgttttacatcaaaatataaaatt- 19216475  T
Q  190 ctaagaacaaggctttcggtcttttactacc 220  Q
    ||||||||||||||||| | |||| ||||||    
T  19216474 ctaagaacaaggctttccgcctttcactacc 19216444  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 29823666 - 29823566
Alignment:
Q  121 gaataaataggtttctcttaaattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattcctaagaacaaggctttcggtcttttactac 219  Q
    ||||||||| ||||||||||||| |||| |||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| | |||| |||||    
T  29823666 gaataaataagtttctcttaaatcttcagaatagtaaatcagagttgttttacatcaaaatataaaattcctaagaacaaagctttccgcctttcactac 29823567  T
Q  220 c 220  Q
    |    
T  29823566 c 29823566  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 5187238 - 5187330
Alignment:
Q  106 gacttcaaaatacacgaataaataggtttctctta-aattttcaaaatagtaaattaaagttgttttacatc-aaatataaaattcctaagaaca 198  Q
    |||||||||||| |  |||||||  |||||||||  ||||||||||||||||||||| | | ||||||| || ||||| ||||||||||||||||    
T  5187238 gacttcaaaataaa--aataaatgagtttctctttgaattttcaaaatagtaaattagaatcgttttacttcaaaatacaaaattcctaagaaca 5187330  T

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