View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_35 (Length: 237)
Name: NF5871_low_35
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 816529 - 816606
Alignment:
| Q |
7 |
taattaaaaatcaagctcataagaaaaccacaattaggcagagaaccgattaatcaaaccacaatccatacaatttta |
84 |
Q |
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| T |
816529 |
taattaaaaatcaagctcataagaaaaccacaattaggcagagaaccaattaatcaaaccacaatccatacaatttta |
816606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 816671 - 816740
Alignment:
| Q |
149 |
ataagttcataagaaaccacaattaagcaaaaacccaattaatcaaaccacaattcatatacaattttac |
218 |
Q |
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| T |
816671 |
ataagttcataagaaaccacaattaagcaaaaacccaattaatcaaaccacaattcatatacaattttac |
816740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 816388 - 816450
Alignment:
| Q |
151 |
aagttcataagaaaccacaattaagcaaaaacccaattaatcaaaccacaattcatatacaattt |
215 |
Q |
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| T |
816388 |
aagttcataagaaaccacaactaagcaaagacccaattaatcgaaccataat--atatacaattt |
816450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 816821 - 816858
Alignment:
| Q |
151 |
aagttcataagaaaccacaattaagcaaaaacccaatt |
188 |
Q |
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| T |
816821 |
aagttcataaaaaaccacaattaagcaaaaacccaatt |
816858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 816079 - 816143
Alignment:
| Q |
149 |
ataagttcataagaaaccacaattaagc------aaaaacccaattaatcaaaccacaattcata |
207 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
816079 |
ataagttcataagaaaccgcaattaagcaaaaaaaaaaacccaattcatcaaaccaaaattcata |
816143 |
T |
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