View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871_low_38 (Length: 231)

Name: NF5871_low_38
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871_low_38
NF5871_low_38
[»] chr4 (3 HSPs)
chr4 (121-213)||(23827370-23827462)
chr4 (135-213)||(23823522-23823600)
chr4 (1-46)||(23827249-23827294)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 23827370 - 23827462
Alignment:
Q  121 gagtttcaattcacaatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaatta 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23827370 gagtttcaattcacaatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaatta 23827462  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 23823522 - 23823600
Alignment:
Q  135 aatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaatta 213  Q
    |||||||  |||||||| |||||  ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||    
T  23823522 aatcatggttcatttctgttggatatgaccttctctactttgttgttgtgatctataggcaacaaagctatgggaatta 23823600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23827249 - 23827294
Alignment:
Q  1 cttgctttttctcttgtctatatccttccttgaacttcattactaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23827249 cttgctttttctcttgtctatatccttccttgaacttcattactaa 23827294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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