View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5871_low_4 (Length: 585)

Name: NF5871_low_4
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5871_low_4
NF5871_low_4
[»] chr8 (1 HSPs)
chr8 (345-551)||(12932921-12933127)
[»] chr4 (2 HSPs)
chr4 (345-551)||(14176191-14176397)
chr4 (345-551)||(28609479-28609686)
[»] chr7 (1 HSPs)
chr7 (364-551)||(15298711-15298898)
[»] chr5 (1 HSPs)
chr5 (345-552)||(38995138-38995344)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 345 - 551
Target Start/End: Complemental strand, 12933127 - 12932921
Alignment:
Q  345 tcatctccatatccgataaatatgcagggaatagctttatcatcaagtttttgtctatgctccttatttacatgagcaaaggctttgcatccaaataccg 444  Q
    ||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12933127 tcatctccatagcccacaaatatgcaaggaatggctttatcatcaagtttttgtctatgctccttatttacatgagcaaaggctttgcatccaaatacct 12933028  T
Q  445 tcaggtgagagtaacttatatcatgtccggactatactctctcaggaatgtcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtggt 544  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12933027 tcaggtgagagtaacttatatcatgtccggaccatactctctcaggaatgtcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtggt 12932928  T
Q  545 ttgaaca 551  Q
    |||||||    
T  12932927 ttgaaca 12932921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 345 - 551
Target Start/End: Complemental strand, 14176397 - 14176191
Alignment:
Q  345 tcatctccatatccgataaatatgcagggaatagctttatcatcaagtttttgtctatgctccttatttacatgagcaaaggctttgcatccaaataccg 444  Q
    ||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14176397 tcatctccatagcccacaaatatgcaaggaatggctttatcatcaagtttttgtctatgctccttatttacatgagcaaaggctttgcatccaaatacct 14176298  T
Q  445 tcaggtgagagtaacttatatcatgtccggactatactctctcaggaatgtcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtggt 544  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14176297 tcaggtgagagtaacttatatcatgtccggaccatactctctcaggaatgtcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtggt 14176198  T
Q  545 ttgaaca 551  Q
    |||||||    
T  14176197 ttgaaca 14176191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 345 - 551
Target Start/End: Original strand, 28609479 - 28609686
Alignment:
Q  345 tcatctccatatccgataaatatgcagggaatagctttatcatcaagtttt-tgtctatgctccttatttacatgagcaaaggctttgcatccaaatacc 443  Q
    ||||||||||| || | ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28609479 tcatctccatagcccacaaatatgcaaggaatggctttatcatcaagttttttgtctatgctccttatttacatgagcaaaggctttgcatccaaatacc 28609578  T
Q  444 gtcaggtgagagtaacttatatcatgtccggactatactctctcaggaatgtcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtgg 543  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28609579 ttcaggtgagagtaacttatatcatgtccggaccatactctctcaggaatatcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtgg 28609678  T
Q  544 tttgaaca 551  Q
    ||||||||    
T  28609679 tttgaaca 28609686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 364 - 551
Target Start/End: Complemental strand, 15298898 - 15298711
Alignment:
Q  364 atatgcagggaatagctttatcatcaagtttttgtctatgctccttatttacatgagcaaaggctttgcatccaaataccgtcaggtgagagtaacttat 463  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||| |||| ||||||||||    
T  15298898 atatgcaaggaatggctttatcatcaagtttttgtctatgctccttatttacatgaacaaaggctttacatccaaacaccttcaagtgaaagtaacttat 15298799  T
Q  464 atcatgtccggactatactctctcaggaatgtcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtggtttgaaca 551  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  ||||||||    
T  15298798 atcatgtccggaccgtactctctcaggaatgtcaaagcccaaaggaatagatgaagatctgttaatcaggtagcatgtcttttgaaca 15298711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 345 - 552
Target Start/End: Original strand, 38995138 - 38995344
Alignment:
Q  345 tcatctccatatccgataaatatgcagggaatagctttatcatcaagtttttgtctatgctccttatttacatgagcaaaggctttgcatccaaataccg 444  Q
    ||||||||||| || | |||||| || ||||| ||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||| ||| |||     
T  38995138 tcatctccataccccacaaatatacaaggaatggctttatcatcaagttttt-tctacgctccttacttacatgagccaaggctttgcatcaaaacacct 38995236  T
Q  445 tcaggtgagagtaacttatatcatgtccggactatactctctcaggaatgtcaaagcccaaaggaacagatggagatctgttaatcaggtagcatgtggt 544  Q
    |||  ||| | |||||||||||||||||     ||||| | ||||||||||||||| ||||||||||| ||| |||||  ||||| |||||| |||||||    
T  38995237 tcaaatgaaaataacttatatcatgtccaacacatactttttcaggaatgtcaaagtccaaaggaacatatgtagatcaattaattaggtagtatgtggt 38995336  T
Q  545 ttgaacaa 552  Q
    || |||||    
T  38995337 ttaaacaa 38995344  T

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