View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5871_low_41 (Length: 207)
Name: NF5871_low_41
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13563710 - 13563903
Alignment:
| Q |
1 |
tcccacatagtttcaattttgtaaaaataatattcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaacagaagttccataaattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13563710 |
tcccacatagtttcaattttgtaaaaataatattcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaacagtagttccataaattg |
13563809 |
T |
|
| Q |
101 |
gaacaatgttgtgccaattcattccatgcaatcacacaaaataaaagaaaatctgattgatataatataagctatggcaaaattcatctctgct |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13563810 |
gaacaatgttgtgccaattcattccatgcaatcacacaaaataaaagaaaatctcattgatataatataagctatggcaaaattcatctctgct |
13563903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 14203109 - 14203293
Alignment:
| Q |
1 |
tcccacatagtttcaattttgtaaaaataatattcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaacagaagttccataaattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
14203109 |
tcccacatagtttcaattttgtaaaaataatattcctcacgtaaacccaactttaattaattcacttcacattta------------gttctataaattg |
14203196 |
T |
|
| Q |
101 |
gaacaatgttgtg-ccaattcattccatgcaatcacacaaaa--taaaagaaaatctgattgatataatataagctatggcaaaattcatctctgct |
194 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14203197 |
gaacaattttgtaaccaattcattccatgcaatcacaaaaaaaataaaagaaaatctcattgatataatataagctatggcaaaattcatctctgct |
14203293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 13574601 - 13574744
Alignment:
| Q |
52 |
tttaatccattcacttcacatttaaggaaaacagaagttccataaattggaacaatgttgtg-ccaattcattccatgcaatcacacaaaataaaagaaa |
150 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13574601 |
tttaatccattcacttcacatttaaggtaaacattagttccataaattagaacaattttgtaaccaattcattccatgcaatcacaaaaaataaaagaaa |
13574700 |
T |
|
| Q |
151 |
atctgattgatataatataagctatggcaaaattcatctctgct |
194 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13574701 |
atctcattgatataatataagctatggcaaaattcatctctgct |
13574744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 13571040 - 13571179
Alignment:
| Q |
52 |
tttaatccattcacttcacattta---aggaaaacagaagttccataaattggaacaatgttgtgcc-aattcattccatgcaatcacacaaaataaaag |
147 |
Q |
| |
|
|||||||||||||||||||||||| ||| | || ||||| ||||||||||||||| |||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
13571040 |
tttaatccattcacttcacatttattaaggtattcattagttctataaattggaacaattttgtaactaattcattccatgcaatcacacaaagtaaaac |
13571139 |
T |
|
| Q |
148 |
aaaatctgattgatataatataagctatggcaaaattcatctctg |
192 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||||||| |
|
|
| T |
13571140 |
aaaatctcattg-----atataagctatggcaaaatacatctctg |
13571179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7421885 - 7421952
Alignment:
| Q |
1 |
tcccacatagtttcaattttgtaaaaataatattcctcacgcaaacccaac-tttaatccattcactt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
7421885 |
tcccacatagtttcaattttgtaaaaatattattcctcacgcaaacgcaacttttaattcattcactt |
7421952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3917633 - 3917544
Alignment:
| Q |
1 |
tcccacatagt-ttcaattttgtaaaaataat-----attcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaaca |
84 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||||||| | |||||| ||||||||| |||||||||||||||| |
|
|
| T |
3917633 |
tcccacatagtcttcaactttgtaaaaataatgtagtattcctcacgcaaacctgaatttaattcattcacttaacatttaaggaaaaca |
3917544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 4219926 - 4220001
Alignment:
| Q |
5 |
acatagtttcaattttgtaaaaataatattcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaa |
82 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||||||||||| ||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
4219926 |
acatattttcaattttttgaaaataattttcctcacgcaaaatcaaatttaattcattcactt--catttaaggaaaa |
4220001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 3929964 - 3929928
Alignment:
| Q |
12 |
ttcaattttgtaaaaataatattcctcacgcaaaccc |
48 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3929964 |
ttcaattttgtaaaaataatatacctcactcaaaccc |
3929928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 5388858 - 5388922
Alignment:
| Q |
36 |
ctcacgcaaacccaactttaatccattcacttcacatttaaggaaaacagaagttccataaattg |
100 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||| |||||||||||| || ||||| |||||||| |
|
|
| T |
5388858 |
ctcacgcaaaaccaaatttaattcattcacttctcatttaaggaaatcattagttcgataaattg |
5388922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University