View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_5 (Length: 553)
Name: NF5871_low_5
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 6515370 - 6515023
Alignment:
| Q |
14 |
agggcatgtgtacttactggtggttttgaagaaagtaagcacttagtattgtctgaatttataacttcatgatttccatgtttccctgaactatcattac |
113 |
Q |
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| T |
6515370 |
agggcatgtgtacttactggtggttttgaagaaagtaagcgcttagtattgtctgaatttataacttcatgatttccatgtttccctgaactatcattac |
6515271 |
T |
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| Q |
114 |
tattggcaggagaacttctattcgatgaagtttgcgacgaggagcttccggctgataatcttggacctctgggtgaattgttatcttcaagaatattgga |
213 |
Q |
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| T |
6515270 |
tattggcaggagaacttctattcgatgaagtttgcgacgaggagcttccggctgataatcttggacctctgggtgaattgttatcttcaagaatattgga |
6515171 |
T |
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| Q |
214 |
tttacatggtgtcatcagtgtaacatctttcacatcatgtaatggttcccaagctttgtttgcatctttgaatggtttcctttataaagtaatgagacaa |
313 |
Q |
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| T |
6515170 |
tttacatggtgtcatcagtgtaacatctttcatatcatgtaatggttcccaggctttgtttgcatctttgaatggtttcctttataaagtaatgagacaa |
6515071 |
T |
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| Q |
314 |
gaaaatacacaacatcatataattagtaaagtaaaactttaaggttca |
361 |
Q |
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| T |
6515070 |
gaaaatacacaacatcatataattagtagagtaaaactttaaggttca |
6515023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 454
Target Start/End: Complemental strand, 6514230 - 6514146
Alignment:
| Q |
370 |
aaaaaatgaccccaaaaatgatacgagggaccaaagtccataaaaacttaatttggaggggaaaaacggtttttaagataatgag |
454 |
Q |
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| T |
6514230 |
aaaaaatgaccccaaaaatgatacgaggaaccaaagttcataaaaacttaatttggaggggaaaaacggtttttaagataatgag |
6514146 |
T |
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