View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5871_low_9 (Length: 494)
Name: NF5871_low_9
Description: NF5871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5871_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 57 - 433
Target Start/End: Original strand, 9130671 - 9131047
Alignment:
| Q |
57 |
gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
156 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9130671 |
gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
9130770 |
T |
|
| Q |
157 |
ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga |
256 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
9130771 |
ctgcagctagactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaaga |
9130870 |
T |
|
| Q |
257 |
taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
356 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9130871 |
taacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
9130970 |
T |
|
| Q |
357 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
433 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9130971 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
9131047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 57 - 433
Target Start/End: Original strand, 9122575 - 9122940
Alignment:
| Q |
57 |
gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
156 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9122575 |
gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
9122674 |
T |
|
| Q |
157 |
ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga |
256 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9122675 |
ctgcagctcgactcctcttcaatcattctcccggatctcaactccattcatagaataaccaagggctcccctttaaacggctaagactccatttcaaaga |
9122774 |
T |
|
| Q |
257 |
taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
356 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9122775 |
taacactttgatctcatc-----------gacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
9122863 |
T |
|
| Q |
357 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9122864 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
9122940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 9123039 - 9123086
Alignment:
| Q |
432 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
9123039 |
aaacatcaaataaagacattggcagtaataactataagagtaactgat |
9123086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 9131146 - 9131193
Alignment:
| Q |
432 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
9131146 |
aaacatcaaataaagacattggcagtaataactataagagtaactgat |
9131193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 59 - 417
Target Start/End: Original strand, 24524526 - 24524885
Alignment:
| Q |
59 |
agcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaacca-gaaaaaagacatccagacggaccactgatctgc |
157 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
24524526 |
agcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccaagaaaaaagacatccagacggaccactgatctgc |
24524625 |
T |
|
| Q |
158 |
tgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaagat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
24524626 |
tgcagctggactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaagat |
24524725 |
T |
|
| Q |
258 |
aacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc |
357 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524726 |
aacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc |
24524825 |
T |
|
| Q |
358 |
atattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24524826 |
atattaaccaataacccctctttgatatcagcaatgaacctttctagttgcaaaaacaaa |
24524885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 218 - 380
Target Start/End: Original strand, 10323138 - 10323301
Alignment:
| Q |
218 |
agggctcccctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttt |
317 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||| | | || |||| ||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |
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|
| T |
10323138 |
agggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttgatgattttt |
10323237 |
T |
|
| Q |
318 |
t-cattcctagccttccaaagaacccaaataacggagtgccatattaaccaataacccctcttt |
380 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10323238 |
cgcatttctagccttccaaagaaccaaaataacggagtgccaaattaaccaataacccctcttt |
10323301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 10323079 - 10323126
Alignment:
| Q |
125 |
gaaaaaagacatccagacggaccactgatctgctgcagctggactcct |
172 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
10323079 |
gaaaaatgacatccagacggaccacttatctgcttcagctggactcct |
10323126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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