View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5872-Insertion-1 (Length: 916)

Name: NF5872-Insertion-1
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5872-Insertion-1
NF5872-Insertion-1
[»] chr1 (6 HSPs)
chr1 (9-877)||(37317891-37318756)
chr1 (497-591)||(7988453-7988548)
chr1 (543-585)||(30847728-30847771)
chr1 (542-591)||(19637775-19637825)
chr1 (532-591)||(26777379-26777440)
chr1 (549-591)||(33202918-33202960)
[»] chr4 (3 HSPs)
chr4 (522-587)||(45267857-45267922)
chr4 (497-585)||(5654599-5654687)
chr4 (542-591)||(56049884-56049933)
[»] chr6 (5 HSPs)
chr6 (522-591)||(17168881-17168951)
chr6 (541-591)||(993011-993061)
chr6 (528-585)||(9024184-9024242)
chr6 (554-591)||(18612641-18612678)
chr6 (552-585)||(31563807-31563840)
[»] chr5 (5 HSPs)
chr5 (541-583)||(5399926-5399968)
chr5 (542-591)||(38749565-38749615)
chr5 (542-591)||(28296335-28296385)
chr5 (527-592)||(28322233-28322299)
chr5 (542-591)||(14818305-14818354)
[»] chr7 (5 HSPs)
chr7 (536-591)||(36314629-36314685)
chr7 (542-585)||(3749260-3749303)
chr7 (542-591)||(21247738-21247788)
chr7 (542-587)||(32855361-32855407)
chr7 (522-588)||(1334902-1334970)
[»] chr3 (4 HSPs)
chr3 (536-591)||(11093571-11093627)
chr3 (536-578)||(29039695-29039737)
chr3 (528-585)||(41319318-41319376)
chr3 (553-590)||(47678860-47678897)
[»] chr2 (4 HSPs)
chr2 (532-585)||(18570969-18571023)
chr2 (542-591)||(31026702-31026752)
chr2 (533-577)||(10254025-10254070)
chr2 (552-585)||(37402092-37402125)
[»] chr8 (1 HSPs)
chr8 (542-590)||(3508059-3508108)


Alignment Details
Target: chr1 (Bit Score: 705; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 9 - 877
Target Start/End: Original strand, 37317891 - 37318756
Alignment:
Q  9 tttttgaacctatctctaaaaaggtgaattataaggtagtattgtttttctcaaaagtaaaaacgaccgagtttatcgtttcaaattcagatcaaacagt 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||    
T  37317891 tttttgaacctatctctaaaaaggtgaaatataaggtagtattgtttttctcaaaagtaaaaaccactgagtttatcgtttcaaattcagatcaaaaagt 37317990  T
Q  109 gtaagaacattctattcaaaagtactattaatttttaatattttaagttaatggaattatgaaactgttcttaactgaattttaaaatttcaactgctaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37317991 gtaagaacattctattcaaaagtactattaatttttaatattttaagttaatggaattatgaaactgttcttaactgaattttaaaatttcaactgctaa 37318090  T
Q  209 ctattgtattagtgttctgattaaagnnnnnnnnnnnnnaaaagttttgcagagatgggtttggaggagaatgttgcagaggtagatgacaaagcgagat 308  Q
    ||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37318091 ctattgtattagtgttctgattaaagtttttttttttttt----ttttgcagagatgggtttggaggagaatgttgcagaggtagatgacaaagcgagat 37318186  T
Q  309 ggacgttatgcaaacataccttttacgatttatcgaacgtctctcctgtggtgtttatgtttatgctgaaagaatgttattatcatggtttgaatttctt 408  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37318187 ggacgttatgcaaacataccttttacgatttatcaaacgtctctcctgtggtgtttatgtttatgctgaaagaatgttattatcatggtatgaatttctt 37318286  T
Q  409 ctctttaatttgcaatatgataagatgttgagtactaattgtttgttgaaatgtctcgactaaattattctcaaaatttatttttattctatgaagcaca 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37318287 ctctttaatttgcaatatgataagatgttgagtactaattgtttgttgaaatgtctcaactaaattattctcaaaatttatttttattctatgaagcaca 37318386  T
Q  509 gagtcggacaagaacacaaacacgtcaacactaataataatttaaaaaatgacttaattcaatgtaatcatatgtgttggtgtatgtcggtgtctgaccc 608  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37318387 gagtcggacaagaacacatacacgtcaacactgataataatttaaaaaaggacgtaattcaatgtaatcatatgtgttggtgtatgtcggtgtctgaccc 37318486  T
Q  609 tcggacacgcctgattggaggagtatttgtgcttcatagtttttcttcaagtcgatatcatccaat--------cagacagacagacaaacatcggtctt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||    
T  37318487 tcggacacgcctgattggaggagtatttgtgcttcatagtttttcttcaagtcgatatcttccaatcagacagacagacagacagacaaacatcggtctt 37318586  T
Q  701 taatgtctttgaaacacttggtttgtgtttctctatgttcgttgtcgacatgttgtacctatgacatctaatactaattatggaggctcatctcaaggtg 800  Q
    |||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37318587 taatgtctttgaaacacttggtttgtgtttctctatgttcgtt------atgttgtacctatgacatctaatactaattatggaggctcatctcaa-gtg 37318679  T
Q  801 ctcttataatcaatgattgattgatcattgcttactttgaaagcttagatagtggattgaatggaggattgaagcac 877  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37318680 ctcttataatcaatgattgattgatcattgcttactttgaaagcttatatagtggattgaatggaggattgaagcac 37318756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 497 - 591
Target Start/End: Complemental strand, 7988548 - 7988453
Alignment:
Q  497 ctatgaagcacagagtcggacaagaacacaaacacgtcaacactaataataatttaaaaaa-tgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||| ||| || |||| |||||  |||||||| ||||| |||||||||||| ||| |||| |||||||||||||||||| ||||||||||    
T  7988548 ctatgaagcatagactcagacacgaacaagaacacgtcgacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgt 7988453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 585
Target Start/End: Complemental strand, 30847771 - 30847728
Alignment:
Q  543 taataattt-aaaaaatgacttaattcaatgtaatcatatgtgt 585  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgt 30847728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 19637775 - 19637825
Alignment:
Q  542 ataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||||| |||||||| | ||||||||||||||||||||| |||||    
T  19637775 ataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgt 19637825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 26777440 - 26777379
Alignment:
Q  532 gtcaacactaataataattt--aaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    ||||||||  ||||||||||  |||||||||||||||| |||||||||| |||||| |||||    
T  26777440 gtcaacaccgataataatttgaaaaaaatgacttaattgaatgtaatcacatgtgtgggtgt 26777379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 591
Target Start/End: Original strand, 33202918 - 33202960
Alignment:
Q  549 tttaaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||    
T  33202918 tttaaaaaatgacataaatcaatgtaatcatatgttttggtgt 33202960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 522 - 587
Target Start/End: Original strand, 45267857 - 45267922
Alignment:
Q  522 acacaaacacgtcaacactaataataatttaaaaaatgacttaattcaatgtaatcatatgtgttg 587  Q
    |||| ||||| ||||||||| |||| |||| ||||||||| ||||| |||||||||||||||||||    
T  45267857 acactaacacatcaacactagtaatgattttaaaaatgacataattgaatgtaatcatatgtgttg 45267922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 585
Target Start/End: Complemental strand, 5654687 - 5654599
Alignment:
Q  497 ctatgaagcacagagtcggacaagaacacaaacacgtcaacactaataataatttaa-aaaatgacttaattcaatgtaatcatatgtgt 585  Q
    ||||||||||||||  ||||||| | |||| ||| ||| ||||| |||||||||| | |||||||| |||||||||||||||||| ||||    
T  5654687 ctatgaagcacagacacggacaa-agcacagacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 56049884 - 56049933
Alignment:
Q  542 ataataatttaaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||| | ||||||| || |||||||||||||||||||| |||||    
T  56049884 ataataatttgagaaatgacatagttcaatgtaatcatatgtgtcggtgt 56049933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 17168881 - 17168951
Alignment:
Q  522 acacaaacacgtcaacactaataataattt-aaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    ||||||||||||| ||| | |||||||||| |||||||||| |||||||||||||  ||||||||| ||||    
T  17168881 acacaaacacgtcgacattgataataatttgaaaaaatgacataattcaatgtaactatatgtgtttgtgt 17168951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 993061 - 993011
Alignment:
Q  541 aataataatttaaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||||||||||| |  ||||| ||||||| |||||||||||||||    
T  993061 aataataatttaaaaaataatataatttaatgtaaacatatgtgttggtgt 993011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 528 - 585
Target Start/End: Complemental strand, 9024242 - 9024184
Alignment:
Q  528 acacgtcaacactaataataatttaa-aaaatgacttaattcaatgtaatcatatgtgt 585  Q
    ||||||| |||| ||| ||||||| | |||||||| |||||||||||||||||||||||    
T  9024242 acacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgt 9024184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 591
Target Start/End: Original strand, 18612641 - 18612678
Alignment:
Q  554 aaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||| | |||||||||||||||||||||||||||||    
T  18612641 aaaatgtcataattcaatgtaatcatatgtgttggtgt 18612678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 585
Target Start/End: Complemental strand, 31563840 - 31563807
Alignment:
Q  552 aaaaaatgacttaattcaatgtaatcatatgtgt 585  Q
    |||||||||| |||||||||||||||||||||||    
T  31563840 aaaaaatgacgtaattcaatgtaatcatatgtgt 31563807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 583
Target Start/End: Original strand, 5399926 - 5399968
Alignment:
Q  541 aataataatttaaaaaatgacttaattcaatgtaatcatatgt 583  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  5399926 aataataatttaaaaaatgacataattcaatgtaattatatgt 5399968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 591
Target Start/End: Complemental strand, 38749615 - 38749565
Alignment:
Q  542 ataataattt-aaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||    
T  38749615 ataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 28296335 - 28296385
Alignment:
Q  542 ataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||| | |||||||| |||||||||||| ||||||||||||||||    
T  28296335 ataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgt 28296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 28322233 - 28322299
Alignment:
Q  527 aacacgtcaacactaataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttggtgta 592  Q
    |||||||| |||||| | ||||||| | ||||||| |||||| |||||||||| |||||||||||||    
T  28322233 aacacgtcgacactagtgataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgta 28322299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 591
Target Start/End: Complemental strand, 14818354 - 14818305
Alignment:
Q  542 ataataatttaaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||| | ||||||| ||||||||||||| ||||||||| |||||    
T  14818354 ataataatttgagaaatgacataattcaatgtaaacatatgtgtcggtgt 14818305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 591
Target Start/End: Complemental strand, 36314685 - 36314629
Alignment:
Q  536 acactaataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    ||||| |||||||||| | |||||||| || ||||||||||||||||||||||||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgt 36314629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 585
Target Start/End: Original strand, 3749260 - 3749303
Alignment:
Q  542 ataataatttaaaaaatgacttaattcaatgtaatcatatgtgt 585  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||    
T  3749260 ataataatttaaaaaatgacataattcaatgcaatcagatgtgt 3749303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 591
Target Start/End: Complemental strand, 21247788 - 21247738
Alignment:
Q  542 ataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||| | |||||||| ||||||||||||||||| |||||||||||    
T  21247788 ataataatttgagaaaatgacgtaattcaatgtaatcatgtgtgttggtgt 21247738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 32855361 - 32855407
Alignment:
Q  542 ataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttg 587  Q
    |||||||||||| ||||||| |||||| |||||||||||||||||||    
T  32855361 ataataatttaagaaaatgatttaattgaatgtaatcatatgtgttg 32855407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 588
Target Start/End: Complemental strand, 1334970 - 1334902
Alignment:
Q  522 acacaaacacgtcaacactaataataattt--aaaaaatgacttaattcaatgtaatcatatgtgttgg 588  Q
    ||||| |||| || |||| |||||||||||  |||||||||| |||||||||||| | |||||||||||    
T  1334970 acacatacacctccacaccaataataatttgaaaaaaatgacataattcaatgtatttatatgtgttgg 1334902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 591
Target Start/End: Original strand, 11093571 - 11093627
Alignment:
Q  536 acactaataataattt-aaaaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    ||||| |||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  11093571 acactgataataatttgaaaaaatgacataattcaaagtaatcagatgtgttggtgt 11093627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 536 - 578
Target Start/End: Original strand, 29039695 - 29039737
Alignment:
Q  536 acactaataataatttaaaaaatgacttaattcaatgtaatca 578  Q
    |||||||||||||||||||||||||  ||||| ||||||||||    
T  29039695 acactaataataatttaaaaaatgatgtaattaaatgtaatca 29039737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 528 - 585
Target Start/End: Complemental strand, 41319376 - 41319318
Alignment:
Q  528 acacgtcaacactaataataattt-aaaaaatgacttaattcaatgtaatcatatgtgt 585  Q
    ||||||| |||| ||||||||||| |||||||||| ||||||||||||||  |||||||    
T  41319376 acacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgt 41319318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 590
Target Start/End: Original strand, 47678860 - 47678897
Alignment:
Q  553 aaaaatgacttaattcaatgtaatcatatgtgttggtg 590  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  47678860 aaaaatgacataattgaatgtaatcatatgtgttggtg 47678897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 532 - 585
Target Start/End: Original strand, 18570969 - 18571023
Alignment:
Q  532 gtcaacactaataataatttaa-aaaatgacttaattcaatgtaatcatatgtgt 585  Q
    ||||||||  |||||||||| | |||||||| |||||||||||||||||||||||    
T  18570969 gtcaacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18571023  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 31026702 - 31026752
Alignment:
Q  542 ataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttggtgt 591  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| |||||    
T  31026702 ataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgt 31026752  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 577
Target Start/End: Original strand, 10254025 - 10254070
Alignment:
Q  533 tcaacactaataataatt-taaaaaatgacttaattcaatgtaatc 577  Q
    |||||||||||||||||| || |||||||| |||||||||||||||    
T  10254025 tcaacactaataataattgtagaaaatgacataattcaatgtaatc 10254070  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 585
Target Start/End: Complemental strand, 37402125 - 37402092
Alignment:
Q  552 aaaaaatgacttaattcaatgtaatcatatgtgt 585  Q
    |||||||||| |||||||||||||||||||||||    
T  37402125 aaaaaatgacataattcaatgtaatcatatgtgt 37402092  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 590
Target Start/End: Original strand, 3508059 - 3508108
Alignment:
Q  542 ataataatttaa-aaaatgacttaattcaatgtaatcatatgtgttggtg 590  Q
    |||||||||| | ||||| || ||||||||||||||||||||||||||||    
T  3508059 ataataatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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