View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872-Insertion-2 (Length: 598)
Name: NF5872-Insertion-2
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872-Insertion-2 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 9 - 598
Target Start/End: Complemental strand, 25345386 - 25344787
Alignment:
| Q |
9 |
ttttatcctatcctcccttgctaattcttaatcattgtcacatacatatgtttaa-atttatgttattcattataattattctaatttctaatttctagg |
107 |
Q |
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| T |
25345386 |
ttttatcctatcctcccttgctaattcttaatcattgtcacatacatatgttttatatttatgttattcattacaattattctaatttctaatttctagg |
25345287 |
T |
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| Q |
108 |
tgtggatgcaaattctgctacaaatgtgggaagaagcgatcatttacatctgcacatacatgcaaatagcagttagtttattattccactgtttcagagg |
207 |
Q |
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| T |
25345286 |
tgtggatgcaaattctgctacaaatgtgggaagaagcgatcatttacatctgcacatacatgcaaatagcagttagtttattattccactgtttcaga-g |
25345188 |
T |
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| Q |
208 |
taactcatctttcatatataaataaattctatttaataagaaatgactagaaattaaatattttgaattttatgatgatctgttttgtcgtttccattca |
307 |
Q |
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| T |
25345187 |
taactcatctttcatatataaataacttctatttaataagaaatgactagaaataaaatattttgaattttatgatgatctgttttgtcgtttccattca |
25345088 |
T |
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| Q |
308 |
atatatac----------actctatttcaattccttgtagtcaccaaaattctttcgacatatggaatgtttatttctctgtatcgatttgttatatgat |
397 |
Q |
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| T |
25345087 |
atatatacactacgccaaactctatttcaattccttgtagtcatcaaaattctttcgacgtatggaatgtttatttctctgtatcgatttgttatatgat |
25344988 |
T |
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| Q |
398 |
tgtcatgaatgatattgtggcaataagacgcctcgagttacttataccaaggtaattgaaactagatcagcactgaaccggcgtaatcacactggtttac |
497 |
Q |
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| T |
25344987 |
tgtcatgaatgatattgtggcaataagacgccttgagttacttataccaaggtaattaaaactagatcagcactgaaccggtgtaatcacactggtttac |
25344888 |
T |
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| Q |
498 |
ggtttaatcgtttgggttgtcatctatttgcaaaagtacgagctaggctaatttgtttatgaacatttgatattcattttgttgcatgtaaattgtcttt |
597 |
Q |
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| T |
25344887 |
ggtttagtcgtttgggttgtcatctatttgcaaaagtacgagctaggcttatttgtttatgaacatttgatattcattttgttgcatgtaaattgtcttt |
25344788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 25339632 - 25339441
Alignment:
| Q |
25 |
cttgctaattcttaatcattgtcacatacatatgtttaaatttatgttattcattataattattctaatttctaatttctaggtgtggatgcaaattctg |
124 |
Q |
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| T |
25339632 |
cttgctaattcttaatcactgtcacatacatatgtttaaattcat--tat--aatataatt---ctaatttctaatttctagttgtggatgcaaattctg |
25339540 |
T |
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| Q |
125 |
ctacaaatgtgggaagaagcgatcatttacatct---gcacatacatgcaaatagcagttagtttattattccactgtttcagaggtaactcatctttc |
220 |
Q |
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| T |
25339539 |
ctacaattgtgggaagaagcgatcatatcaatttcgacgacatatatgcatatagcagttagtttattattcaactgtttcagaggtaactcatctttc |
25339441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 25334308 - 25334007
Alignment:
| Q |
12 |
tatcctatcctcccttgctaattcttaatcattgtcacatacatatgtttaaa-------tttatgttattcattataattattctaatttctaatttct |
104 |
Q |
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| T |
25334308 |
tatcctatc-tctcttgctaatccttgatcattgtcacatacatatttttaataattaagtttatgtaattcattataataattgtaatttcta-tttct |
25334211 |
T |
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| Q |
105 |
aggtgtggatgcaaattctgctacaaatgtgggaagaagcgatcatttacatctgcacatacatgcaa--atagcagttagtttattattccactgtttc |
202 |
Q |
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| T |
25334210 |
aggtgtggatgcaaattttgctatgattgtgggaagaaacgaccgtttgcatatgtacatatatgcaaggtcccctgttaggtttctattccattgtttc |
25334111 |
T |
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| Q |
203 |
agaggtaactcatctttcatatataaataaattctatttaataagaaatgactagaaattaaatattttgaattttatgatgatctgttttgtcgtttcc |
302 |
Q |
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| T |
25334110 |
aaaggtaacacatcttgcatttataaatatattatgcttattaacatatgactagaaa-taatttttttgaattttatgatgatcaattttgttgtttcc |
25334012 |
T |
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| Q |
303 |
attca |
307 |
Q |
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| T |
25334011 |
attca |
25334007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 25339353 - 25339303
Alignment:
| Q |
375 |
tctgtatcgatttgttatatgattgtcatgaatgatattgtggcaataaga |
425 |
Q |
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| T |
25339353 |
tctgtatcgatttgtcatatgattgttatgaatgatattggggcaataaga |
25339303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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