View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872-Insertion-3 (Length: 540)
Name: NF5872-Insertion-3
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 52627025 - 52627363
Alignment:
| Q |
8 |
aaacactttattttttagttgttgttttaggattatgaaatgtgttatttaaatacaaaaatgttagatatcatatctgattgtataaaatgtaactgag |
107 |
Q |
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| T |
52627025 |
aaacactttcttttttagttgttattttagaattatgagatgtgttatttaaatacaaaaatgttagatatcatatctggttgtataaaacgtaactgag |
52627124 |
T |
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| Q |
108 |
atgtgtgtggtgttggaatc-aaaagggagaacaaataatataaaagtaaaaaactatatatacaccagttttgtcattggatcacttcaaaaaccaaca |
206 |
Q |
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| T |
52627125 |
atgtgtgtggtgttggaatcaaaaagggagaacaaataatataaaagtaaaaaactatatatacaccagttttgtcattggatcacttcaaaaaccaaca |
52627224 |
T |
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| Q |
207 |
atcggtatattnnnnnnntattgctttgnnnnnnnnaacaaccatcacatatatatgatagtttaaactaagattgatattataagttttcaaccatgaa |
306 |
Q |
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| T |
52627225 |
atcggtatattaaaaaaatattgctttgttttttttaacaaccatcac----atatgatagtttaaaccaaaatcgatattataagttttcaaccatcaa |
52627320 |
T |
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| Q |
307 |
attgaatgtaacttacctttatcaaacatatgctgaattatat |
349 |
Q |
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| T |
52627321 |
agtgaaagtaacttgactttatcaaacatatggtgaattatat |
52627363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 350 - 507
Target Start/End: Original strand, 52631459 - 52631617
Alignment:
| Q |
350 |
attttccttagctttgaaaactatgtcattccttcattccacataactcaaacacaacataaaccnnnnnnnnnnnt-gctctgttagtcctcactctat |
448 |
Q |
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| T |
52631459 |
attttccttagctttgaaaactatgtcattccttcattccacataactcaaacacaacataaaccaaaaaaaaaaaaagctttggtagtcctcactctat |
52631558 |
T |
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| Q |
449 |
ttctcaatcaggtcggtggtattaacaaccaccaatattgattttcacatgagctacac |
507 |
Q |
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| T |
52631559 |
ttctcaatcaggttggtggtattaacaaccaccaatattgattttcacatgagctacac |
52631617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 411
Target Start/End: Complemental strand, 24838587 - 24838436
Alignment:
| Q |
259 |
atatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaacttacctttatcaaacatatgctgaattatatattttcctt |
358 |
Q |
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| T |
24838587 |
atatgagagtttaacccaagattgacattataagctttcaaccaccaaaatgaatgtaatttgactttatctaacatctgatgaattgtgt--tttcctt |
24838490 |
T |
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| Q |
359 |
agctttgaaaactatgtcattcct-tcattccacataactcaaacacaacataa |
411 |
Q |
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| T |
24838489 |
agccttaaaaactctatttttcctctcattccacataacccaaacacaacataa |
24838436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 411
Target Start/End: Original strand, 18186768 - 18186919
Alignment:
| Q |
259 |
atatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaacttacctttatcaaacatatgctgaattatatattttcctt |
358 |
Q |
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|||||| ||||||||| |||||||| |||||||| ||||||||| ||| |||||||||||| ||||||| ||||| || ||||| | | |||||||| |
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| T |
18186768 |
atatgagagtttaaaccaagattgagattataagctttcaaccaccaaaatgaatgtaacttgactttatcgaacatctggtgaat--tgtgttttcctt |
18186865 |
T |
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| Q |
359 |
agctttgaaaactatgtcattcc-ttcattccacataactcaaacacaacataa |
411 |
Q |
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| T |
18186866 |
agccttgaaacctctattattccgctcattccacataactcaaacacaacataa |
18186919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 411
Target Start/End: Original strand, 15142955 - 15143106
Alignment:
| Q |
259 |
atatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaacttacctttatcaaacatatgctgaattatatattttcctt |
358 |
Q |
| |
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|||||| ||||||||| |||||||| |||||||| ||| ||||| ||| |||||||||||| ||||||| ||||| | ||||| | | ||||||| |
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| T |
15142955 |
atatgagagtttaaaccaagattgacattataagcttttaaccaccaaaatgaatgtaacttgactttatctaacatctcgtgaat--tgtggtttcctt |
15143052 |
T |
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| Q |
359 |
agctttgaaaactatgtcattcc-ttcattccacataactcaaacacaacataa |
411 |
Q |
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| T |
15143053 |
ggccttgaaaactctgttattccgctccttccacataactcaaacacaacataa |
15143106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 28350268 - 28350205
Alignment:
| Q |
257 |
atatatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaactt |
320 |
Q |
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| T |
28350268 |
atatatgagagtttaaaccaaaattgacattataagttttcaaccatcaaaatgaatgtaactt |
28350205 |
T |
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