View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5872-Insertion-4 (Length: 480)

Name: NF5872-Insertion-4
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5872-Insertion-4
NF5872-Insertion-4
[»] chr8 (1 HSPs)
chr8 (9-480)||(40418430-40418901)


Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Original strand, 40418430 - 40418901
Alignment:
Q  9 gctgatagtttgaagagaaccattgcaaccacaccagcaggagagctttttatctactttttgataattttgaatactacttttgttgttgtttatgtta 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40418430 gctgatagtttgaagagaaccattgcaaccacaccagctggagagttttttatctactttttgataattttgaatactacttttgttgttgtttatgttg 40418529  T
Q  109 taatatcatatctcaatcggggaaacatgataccatctatcgtcatcattgtatttaatatgatgatagatggatttctctattacgtgtgttcggatgc 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40418530 taatatcatatctcaatcggggaaacatgataccatctgtcgtcatcattgtatttaatatgatgatagatgggtttctctattacgtgtgttcggatgc 40418629  T
Q  209 tgcatgagtcgttaaagctttggtttgggttattgtttgtcttgcaggcctattactatcgaaatacttcagacgcatcattgtgaagaggttctagtgc 308  Q
    ||||||||| |||  ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40418630 tgcatgagttgttgtagctttggtttgggttattgtttatcttgcaggccttttactatcgaaatacttcagacgcatcattgtgaagaggttctagtgc 40418729  T
Q  309 gttgaagtagctcgtaatcgtgttgcagtttgagccatgtaaggtaaaagttggccacagacgtccacaaacctaatatgcagacacatggaactgctgt 408  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||| |||    
T  40418730 gttgaagtagttcgtaatcgtattgcagtttgagccatgtagggtaaaagttggccacagacgtccacaaacctaatatgtagacatgtggaactgttgt 40418829  T
Q  409 tgaaggaggtgcatattgcagttttttccttttatgacaaagatgcactatgatgttaatccttttgtccat 480  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40418830 tgaaggaggtgcatattgcagttttttccttttatgaaaaagatgcactatgatgttaatccttttgtccat 40418901  T

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