View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872-Insertion-6 (Length: 273)
Name: NF5872-Insertion-6
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872-Insertion-6 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 39300032 - 39300297
Alignment:
| Q |
8 |
acatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgacttgccaatcacgagaatattgatt |
107 |
Q |
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| T |
39300032 |
acatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgacttgccagtcacgagaatattgatt |
39300131 |
T |
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| Q |
108 |
ttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttgtatatacctactatgaaggaacaa |
207 |
Q |
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| T |
39300132 |
ttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttgtatatacctactatgaaggaacaa |
39300231 |
T |
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| Q |
208 |
gctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttca |
273 |
Q |
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| T |
39300232 |
gctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttca |
39300297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 39247896 - 39247988
Alignment:
| Q |
181 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttca |
273 |
Q |
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| T |
39247896 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttca |
39247988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 39196652 - 39196735
Alignment:
| Q |
188 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatctt |
271 |
Q |
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| T |
39196652 |
tacctactatgaaggagcaagctttccatcgtccagtttttgatcttaaaacaggtctaccttttaggtctactgtaccatctt |
39196735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 39218224 - 39218307
Alignment:
| Q |
188 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatctt |
271 |
Q |
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| T |
39218224 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatctt |
39218307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 39225322 - 39225405
Alignment:
| Q |
188 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatctt |
271 |
Q |
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| T |
39225322 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatctt |
39225405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 39179407 - 39179488
Alignment:
| Q |
188 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatc |
269 |
Q |
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| T |
39179407 |
tacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatc |
39179488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 39240973 - 39241035
Alignment:
| Q |
188 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctt |
250 |
Q |
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| T |
39240973 |
tacctacaaggaaggaacaagctttccatgttccagtctttgatcttaaaactggtctgcctt |
39241035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 39258403 - 39258465
Alignment:
| Q |
188 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctt |
250 |
Q |
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| T |
39258403 |
tacctactataaaagagcaagctttccatcttccggtctttgatcttaaaaccggtttacctt |
39258465 |
T |
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