View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872-Insertion-9 (Length: 91)
Name: NF5872-Insertion-9
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872-Insertion-9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 5470466 - 5470384
Alignment:
| Q |
9 |
aaaatcccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccg |
91 |
Q |
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| T |
5470466 |
aaaattccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccg |
5470384 |
T |
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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 5476469 - 5476545
Alignment:
| Q |
15 |
ccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccg |
91 |
Q |
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| T |
5476469 |
ccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccg |
5476545 |
T |
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