View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5872_high_11 (Length: 236)
Name: NF5872_high_11
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23552051 - 23551829
Alignment:
| Q |
1 |
taatcattgaactcaacagctttctcaagaatgacttccgtaaaaacaacagcctataagacagttataataaacaaatttaaatttattcaaataagtc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23552051 |
taatcattgaactcaacagctatctcaagactgacttccgtaaaaacaacagcctataagacagttataataaacaaatttaaatttattcaaataagtc |
23551952 |
T |
|
| Q |
101 |
agaaactaatggacacactatacaactccaaagaaggacaagttttaatgaaatggtcaagtaaatccaaacttgctcctctcacatgacttcattaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
23551951 |
agaaactaatggacacactatacaactctaaagaaggacaagttttaatgaaatggtcaaataaattcaaacttgctcctctcacatgacttcattaaat |
23551852 |
T |
|
| Q |
201 |
gatctacaatagaatatgttatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23551851 |
gatctacaatagaatatgttatt |
23551829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30834549 - 30834772
Alignment:
| Q |
1 |
taatcattgaactcaacagctttctcaagaatgacttccgtaaaaacaacagcctataagacagttataataaacaaatttaaatttattcaaataagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30834549 |
taatcattgaactcaacagctttctcaagactgacttcggtaaaaacaacagcctacaagacagttataataaacatatttaaatttattcaaataagtc |
30834648 |
T |
|
| Q |
101 |
agaaactaatggacacactatacaactccaaagaaggacaagttttaatgaaatggtcaagtaaatccaaacttgctcctctcacatgacttcattaatt |
200 |
Q |
| |
|
|||||| ||||||| |||||||||||| | |||||| ||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
30834649 |
agaaacaaatggacgcactatacaactacgaagaagtacaagttctactgaaatggtcaagtaaattcaaacttgctcctcttacatgacttcattaatt |
30834748 |
T |
|
| Q |
201 |
gatctacaatagaat-atgttatt |
223 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
30834749 |
gatctacaatagaatgatgttatt |
30834772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30815538 - 30815760
Alignment:
| Q |
1 |
taatcattgaactcaacagctttctcaagaatgacttccgtaaaaacaacagcctataagacagttataataaacaaatttaaatttattcaaataagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30815538 |
taatcattgaactcaacagctttctcaagactgacttcggtaaaaacaacagcctacaagacagttataataaacaaatttaaatttattcaaataagtc |
30815637 |
T |
|
| Q |
101 |
agaaactaatggacacactatacaactccaaagaaggacaagttttaatgaaatggtcaagtaaatccaaacttgctcctctcacatgacttcattaatt |
200 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
30815638 |
agaaacaaatggacgcactatacaactacaaagaaggacaggttttacagaaatggtcaagtaaat-taaaattgctcgtctcacatgacttcattaatt |
30815736 |
T |
|
| Q |
201 |
gatctacaatagaat-atgttatt |
223 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
30815737 |
gatctacaatagaatgatgttatt |
30815760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University